Job Description P38134 Confidence 99.41% Date Thu Jan 5 11:58:01 GMT 2012 Rank 43 Aligned Residues 148 % Identity 21% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	E	T	E	N	N	I	L	M	I	T	G	A	T	P	D	S	G	K	T	F	V	S	S	T	L	A	A	V	I	A	Q	S	D	Q	K	V	L	F	I	D	A	D	L	R	R	G	Y	S	H	N	L	F	T	V	S	N	E	H	G	L	S	E	Y	L	A	G	K	D	E	L	N	K	V	I	Q	H	F	G
Query Conservation
Alig confidence																	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	.	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	L	L	D
Template Known Secondary structure					S	S	S									T	.	T	S	S														T	T	T											S	S	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G
Template Predicted Secondary structure																	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																						.	.	150	.	.
		606	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640		.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.								.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																			.	.	.	.	.	.	.
Query SS confidence																																					.																			.	.	.	.	.	.	.
Query Sequence		K	G	G	F	D	V	I	T	R	G	Q	V	P	P	N	P	S	E	L	L	M	R	D	R	M	R	Q	L	L	E	W	A	N	D	H	.	Y	D	L	V	I	V	D	T	P	P	M	L	A	V	S	D	A	A	.	.	.	.	.	.	.	V	V	G	R	S	V	G	T	S	L	L	V	A	R	F	G	L	N	T
Query Conservation																																					.																			.	.	.	.	.	.	.
Alig confidence											.														.	.	.	.	.								.																			.	.	.	.	.	.	.																.
Template Conservation											.														.	.	.	.	.																																																	.
Template Sequence		R	Y	H	I	E	V	F	G	N	.	P	Q	E	K	D	A	I	K	L	A	K	E	G	.	.	.	.	.	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	.	T	I	G
Template Known Secondary structure		G	G	T							.	T	T												.	.	.	.	.							T	T		S										S	S																			S								G	.	G	G	G
Template Predicted Secondary structure											.														.	.	.	.	.																																																	.
Template SS confidence
		153	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.
		678	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	V	S	L	S	M	Q	R	L	E	Q	A	G	V	N	I	K	G	A	I	L	N	G	V	I
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	.	.	P	I	G	S	I	I	V	T	K	L	D
Template Known Secondary structure		G	G											S		.	.	T	T									S
Template Predicted Secondary structure																.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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