Job Description P38134 Confidence 97.60% Date Thu Jan 5 11:58:01 GMT 2012 Rank 69 Aligned Residues 143 % Identity 13% Template c3bgwD_ PDB info PDB header:replication Chain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase Resolution 3.91 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.		.	.	.	.	.	.	.	590	.	.	.	.	.	.
Predicted Secondary structure																																																																.															.	.	.
Query SS confidence																																																																.															.	.	.
Query Sequence		S	L	H	F	A	M	M	E	T	E	N	N	I	L	M	I	T	G	A	T	P	D	S	G	K	T	F	V	S	S	T	L	A	A	V	I	A	Q	S	D	Q	K	V	L	F	I	D	A	D	L	R	R	G	Y	S	H	N	L	F	T	V	S	.	N	E	H	G	L	S	E	Y	L	A	G	K	D	E	.	.	.
Query Conservation																																																																.															.	.	.
Alig confidence																																																																.															.	.	.
Template Conservation
Template Sequence		E	L	D	R	M	T	Y	G	Y	K	R	R	N	F	V	L	I	A	A	R	P	S	M	G	K	T	A	F	A	L	K	Q	A	K	N	M	S	D	N	D	D	V	V	N	L	H	S	L	E	M	G	K	K	E	N	I	K	R	L	I	V	T	A	G	S	I	N	A	Q	K	I	K	A	A	R	R	D	F	A	S
Template Known Secondary structure								S	S	B		S	S									S	S	S	S															T	T								S	S	S														S									T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
							597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640					.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																													.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																													.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	L	N	K	V	I	Q	H	F	G	K	G	G	F	D	V	I	T	R	G	Q	V	P	P	N	P	S	E	L	L	M	R	D	R	M	R	Q	L	L	E	W	A	N	D	H	.	.	.	.	Y	D	L	V	I	V	D	T	P	P	M	L	A	V	S	D	A	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																																													.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																								.	.	.	.	.	.	.	.														.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.
Template Sequence		E	D	W	G	K	L	S	M	A	I	G	E	I	S	N	S	N	I	N	I	F	D	K	A	G	Q	S	V	.	.	.	.	.	.	.	.	N	Y	I	W	S	K	T	R	Q	T	K	R	K	N	P	G	K	R	V	I	V	M	I	D	Y	L	Q	L	L	E	P	A	K	A	N	D	S	R	T	N	Q	I	S	Q
Template Known Secondary structure		S														T	S								S	S		B		.	.	.	.	.	.	.	.														S		S	S									S	S	S	S	B		S		S	S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.									.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
							658	.	660	.	.	.	.	.	.	.	.	.	670	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	A	V	V	G	R	S	V	G	T	S	L	L	V	A
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		I	S	R	D	L	K	K	M	A	R	E	L	D	V	V	V	I	A	L
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions