Job Description P38134 Confidence 99.31% Date Thu Jan 5 11:58:01 GMT 2012 Rank 48 Aligned Residues 156 % Identity 21% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	M	M	E	T	E	N	N	I	L	M	I	T	G	A	T	P	D	S	G	K	T	F	V	S	S	T	L	A	A	V	I	A	Q	S	D	Q	K	V	L	F	I	D	A	D	L	R	R	G	Y	S	H	N	L	F	T	V	S	N	E	H	G	L	S	E	Y	L	A	G	K	D	E	L	N	K	V	I	Q	H
Query Conservation
Alig confidence																			.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	.	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	L
Template Known Secondary structure						S	S	S										S	.	S	S	S	T	T																							S				T	T	G	G	G	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																						.	.	150
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.									.	.	.	.	.	670	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.
Query Sequence		F	G	K	G	G	F	D	V	I	T	R	G	Q	V	P	P	N	P	S	E	L	L	M	R	D	R	M	R	Q	L	L	E	W	A	N	D	H	Y	D	L	V	I	V	D	T	P	P	M	L	A	V	S	D	A	A	V	V	G	R	S	V	.	.	.	.	.	.	.	.	G	T	S	L	L	V	A	R	F	G	L
Query Conservation																																																															.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.										.														.												.	.	.	.	.	.	.	.										.	.
Template Conservation																							.	.	.	.	.										.														.																													.	.
Template Sequence		A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	.	.	.	.	.	V	K	E	G	M	E	K	F	K	.	K	A	D	V	L	I	I	D	T	A	G	R	H	.	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	.	.
Template Known Secondary structure					S	S							S	S	S			S	S	S	T	T	.	.	.	.	.							T	T	S	.	S		S									S		.	S	S											T	T	S	S	S			S								G	.	.
Template Predicted Secondary structure																							.	.	.	.	.										.														.																													.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.						.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		676	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	A	K	E	V	S	L	S	M	Q	R	L	E	Q	A	G	V	N	I	K	G	A	I	L	N	G	V	I	K	R	A	S	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	G	Q	Q	A	G	I	Q	A	K	A	F	K	E	A	V	G	E	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G
Template Known Secondary structure		G	G	G	G	G										T	T	S		S									S	S	S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions