Job Description P38134 Confidence 91.02% Date Thu Jan 5 11:58:01 GMT 2012 Rank 204 Aligned Residues 157 % Identity 14% Template c2pssC_ PDB info PDB header:transferase Chain: C: PDB Molecule:spermidine synthase; PDBTitle: the structure of plasmodium falciparum spermidine synthase in its apo-2 form Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	R	A	L	R	T	S	L	H	F	A	M	M	E	T	E	N	N	I	L	M	I	T	G	A	T	P	D	S	G	K	T	F	V	S	S	T	L	A	A	V	I	A	Q	S	D	Q	K	V	L	F	I	D	A	D	L	R	R	G	Y	S	H	N	L	F	T	V	S	N	E	H	G	L	S	E	Y	L	A	G
Query Conservation
Alig confidence																									.	.	.	.	.															.	.																																.	.	.	.	.
Template Conservation																									.	.	.	.	.															.	.																																.	.	.	.	.
Template Sequence		A	Y	H	E	M	M	T	H	V	P	M	T	V	S	K	E	P	K	N	V	L	V	V	.	.	.	.	.	G	G	G	D	G	G	I	I	R	E	L	C	K	Y	.	.	K	S	V	E	N	I	D	I	C	E	I	D	E	T	V	I	E	V	S	K	I	Y	F	K	N	I	S	C	G	Y	E	.	.	.	.	.
Template Known Secondary structure															S	S	S								.	.	.	.	.			T	T									T		.	.	T	T									S																	G	G	G	G	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.															.	.																																.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	E	L	N	K	V	I	Q	H	F	G	K	G	G	F	D	V	I	T	R	G	Q	V	P	P	N	P	S	E	L	L	M	R	D	R	M	R	Q	L	L	E	W	A	N	D	H	Y	D	L	V	I	V	D	T	P	P	M	L	A	V	S	D	A	A	V	V	G	R	S	V	G	T	S	L	L	V	A	R	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	K	R	V	N	V	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	A	S	K	F	L	E	N	V	T	N	T	Y	D	V	I	I	V	D	S	S	N	F	Y	.	.	.	.	E	K	I	Y	N	A	L	K	P	N	G	Y	C	V	A	Q	C
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	S	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T			S														.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template SS confidence
														169	170	.	.	.	.	.	.															.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		674	.			.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		G	L	.	.	N	T	A	K	E	V	S	L	S	M	Q	R	L	E	Q	A	G	V	N	I	K	G	A	I	L	N	G	V	I	K	R	A	S	T	A	Y	S	Y
Query Conservation				.	.
Alig confidence				.	.																	.
Template Conservation																						.
Template Sequence		E	S	L	W	I	H	V	G	T	I	K	N	M	I	G	Y	A	K	K	L	.	F	K	K	V	E	Y	A	N	I	S	I	P	T	Y	P	C	G	C	I	G	I
Template Known Secondary structure				T	T	T														T	T	.		S										T	T	S	G	G	G
Template Predicted Secondary structure																						.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions