Job Description P38134 Confidence 99.26% Date Thu Jan 5 11:58:01 GMT 2012 Rank 50 Aligned Residues 170 % Identity 19% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	V	E	A	V	R	A	L	R	T	S	L	H	F	A	M	M	E	T	E	N	N	I	L	M	I	T	G	A	T	P	D	S	G	K	T	F	V	S	S	T	L	A	A	V	I	A	Q	S	D	Q	K	V	L	F	I	D	A	D	L	R	R	G	Y	S	H	N	L	F	T	V	S	N	E	H	G	L	S	E
Query Conservation
Alig confidence																																	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	F	K	E	L	V	K	L	V	D	P	G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	.	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																						S	S								S	T	.	T	S	S															T	T											S	S	S							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640		.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.								.	660	.
Predicted Secondary structure																																																					.																			.	.	.	.	.	.	.
Query SS confidence																																																					.																			.	.	.	.	.	.	.
Query Sequence		Y	L	A	G	K	D	E	L	N	K	V	I	Q	H	F	G	K	G	G	F	D	V	I	T	R	G	Q	V	P	P	N	P	S	E	L	L	M	R	D	R	M	R	Q	L	L	E	W	A	N	D	H	.	Y	D	L	V	I	V	D	T	P	P	M	L	A	V	S	D	A	A	.	.	.	.	.	.	.	V	V	G
Query Conservation																																																					.																			.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.											.	.	.	.																		.	.	.	.	.								.																			.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.											.	.	.	.																		.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	K	Q	N	A	T	K	A	R	I	P	.	.	.	.	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	.	.	.	.	.	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A
Template Known Secondary structure		.	.	.	.	.	.	.	.								T			.	.	.	.								S										.	.	.	.	.							T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.											.	.	.	.																		.	.	.	.	.
Template SS confidence
										149	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.						.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		662	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	V	G	T	S	L	L	V	A	R	F	G	L	N	T	A	K	E	V	S	L	S	M	Q	R	L	E	Q	A	G	V	N	I	K	G	A	I	L	N	G	V	I	K	R	A	S	T	A
Query Conservation
Alig confidence														.																		.	.
Template Conservation														.																		.	.
Template Sequence		I	Q	P	D	N	I	V	Y	V	M	D	A	.	S	I	G	Q	A	C	E	A	Q	A	K	A	F	K	D	K	V	.	.	D	V	A	S	V	I	V	T	K	L	D	G	H	A	K	G	G
Template Known Secondary structure					S								T	.	T			T	T													.	.										T	T	S					T
Template Predicted Secondary structure														.																		.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions