Job Description P38134 Confidence 98.97% Date Thu Jan 5 11:58:01 GMT 2012 Rank 52 Aligned Residues 156 % Identity 20% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		F	A	M	M	E	T	E	N	N	I	L	M	I	T	G	A	T	P	D	S	G	K	T	F	V	S	S	T	L	A	A	V	I	A	Q	S	.	D	Q	K	V	L	F	I	D	A	D	L	R	R	G	Y	S	H	N	L	F	T	V	S	N	E	H	G	L	S	E	Y	L	A	G	K	D	E	L	N	K	V	I	Q
Query Conservation																																						.
Alig confidence																			.																			.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	.	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	I	K	Q	L	E	T
Template Known Secondary structure				S		S	S	S	S								S	S	.	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.																						.	.	.	.	.	.	.	150
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.		.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.								.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
Predicted Secondary structure																																						.																				.	.	.	.	.	.	.
Query SS confidence																																						.																				.	.	.	.	.	.	.
Query Sequence		H	F	G	K	G	G	F	D	V	I	T	R	G	Q	V	P	P	N	P	S	E	L	L	M	R	D	R	M	R	Q	L	L	E	W	A	N	.	D	H	Y	D	L	V	I	V	D	T	P	P	M	L	A	V	S	D	A	.	.	.	.	.	.	.	A	V	V	G	R	S	V	G	T	S	L	L	V	A	R	F	G
Query Conservation																																						.																				.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.												.																				.	.	.	.	.	.	.																	.
Template Conservation																					.	.	.	.	.	.																																																							.
Template Sequence		L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	.	.	.	.	.	.	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	.
Template Known Secondary structure						T	T							S	S				T	T	.	.	.	.	.	.													T	T		S											S	S																		S								T	.
Template Predicted Secondary structure																					.	.	.	.	.	.																																																							.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	T	A	K	E	V	S	L	S	M	Q	R	L	E	Q	A	G	V	N	I	K	G	A	I	L	N	G	V	I	K	R	A	S	T	A
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	.	.	P	L	T	G	V	V	L	T	K	V	D	G	D	A	R	G	G
Template Known Secondary structure		T	T	G	G	G	G									T	T		.	.	S	S								S	S	S		S			T
Template Predicted Secondary structure																			.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions