Job Description P38134 Confidence 99.38% Date Thu Jan 5 11:58:01 GMT 2012 Rank 44 Aligned Residues 170 % Identity 22% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	V	E	A	V	R	A	L	R	T	S	L	H	F	A	M	M	E	T	E	N	N	I	L	M	I	T	G	A	T	P	D	S	G	K	T	F	V	S	S	T	L	A	A	V	I	A	Q	S	D	Q	K	V	L	F	I	D	A	D	L	R	R	G	Y	S	H	N	L	F	T	V	S	N	E	H	G	L	S	E
Query Conservation
Alig confidence																															.																																									.	.	.	.	.	.	.	.	.	.
Template Conservation																															.																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	.	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T	S	S								S	S								.		T	T	S	S															T	T										S	S									.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640		.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660								.
Predicted Secondary structure																																																					.																					.	.	.	.	.	.	.
Query SS confidence																																																					.																					.	.	.	.	.	.	.
Query Sequence		Y	L	A	G	K	D	E	L	N	K	V	I	Q	H	F	G	K	G	G	F	D	V	I	T	R	G	Q	V	P	P	N	P	S	E	L	L	M	R	D	R	M	R	Q	L	L	E	W	A	N	D	H	.	Y	D	L	V	I	V	D	T	P	P	M	L	A	V	S	D	A	A	V	V	.	.	.	.	.	.	.	G
Query Conservation																																																					.																					.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.											.	.	.	.														.	.	.	.	.												.																					.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.											.	.	.	.														.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	R	L	L	G	E	K	V	G	V	P	.	.	.	.	V	L	E	V	M	D	G	E	S	P	E	S	I	.	.	.	.	.	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V
Template Known Secondary structure		.	.	.	.	.	.	.	.								T			.	.	.	.						T	T							.	.	.	.	.												T		S										S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.											.	.	.	.														.	.	.	.	.
Template SS confidence
										146	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		662	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	V	G	T	S	L	L	V	A	R	F	G	L	N	T	A	K	E	V	S	L	S	M	Q	R	L	E	Q	A	G	V	N	I	K	G	A	I	L	N	G	V	I	K	R	A	S	T	A
Query Conservation
Alig confidence														.																		.	.
Template Conservation														.																		.	.
Template Sequence		L	G	P	D	E	V	L	L	V	L	D	A	.	M	T	G	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	.	.	G	V	T	G	L	V	L	T	K	L	D	G	D	A	R	G	G
Template Known Secondary structure					S								S	.	S	S		S													S	.	.										S	S	S		S
Template Predicted Secondary structure														.																		.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions