Job Description P38134 Confidence 99.35% Date Thu Jan 5 11:58:01 GMT 2012 Rank 45 Aligned Residues 156 % Identity 22% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	M	M	E	T	E	N	N	I	L	M	I	T	G	A	T	P	D	S	G	K	T	F	V	S	S	T	L	A	A	V	I	A	Q	S	D	Q	K	V	L	F	I	D	A	D	L	R	R	G	Y	S	H	N	L	F	T	V	S	N	E	H	G	L	S	E	Y	L	A	G	K	D	E	L	N	K	V	I	Q	H
Query Conservation
Alig confidence																			.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	.	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	L
Template Known Secondary structure				S		S	S	S	S								S	S	.	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																						.	.	.
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640		.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660										.	.	.	.	.	.	.	.	.	670	.	.	.
Predicted Secondary structure																																							.																					.	.	.	.	.	.	.	.	.
Query SS confidence																																							.																					.	.	.	.	.	.	.	.	.
Query Sequence		F	G	K	G	G	F	D	V	I	T	R	G	Q	V	P	P	N	P	S	E	L	L	M	R	D	R	M	R	Q	L	L	E	W	A	N	D	H	.	Y	D	L	V	I	V	D	T	P	P	M	L	A	V	S	D	A	A	V	V	.	.	.	.	.	.	.	.	.	G	R	S	V	G	T	S	L	L	V	A	R	F
Query Conservation																																							.																					.	.	.	.	.	.	.	.	.
Alig confidence															.									.	.	.	.	.											.																					.	.	.	.	.	.	.	.	.
Template Conservation															.									.	.	.	.	.
Template Sequence		G	N	Q	I	G	V	Q	V	Y	G	E	P	N	.	N	Q	N	P	I	E	I	A	.	.	.	.	.	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A
Template Known Secondary structure					T	T							S	S	.				T	T				.	.	.	.	.										T	T		S									S			S	S	T																		S								T
Template Predicted Secondary structure															.									.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	N	T	A	K	E	V	S	L	S	M	Q	R	L	E	Q	A	G	V	N	I	K	G	A	I	L	N	G	V	I	K	R	A	S	T	A
Query Conservation
Alig confidence		.																		.	.
Template Conservation		.																		.	.
Template Sequence		.	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	.	.	P	I	G	S	V	I	I	T	K	M	D	G	T	A	K	G	G
Template Known Secondary structure		.	T	T	G	G	G	G									T	T		.	.	S	S								S	S	S		S			T
Template Predicted Secondary structure		.																		.	.
Template SS confidence
			221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions