Job Description P38134 Confidence 98.47% Date Thu Jan 5 11:58:01 GMT 2012 Rank 54 Aligned Residues 143 % Identity 20% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

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		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	T	E	N	N	I	L	M	I	T	G	A	T	P	D	S	G	K	T	F	V	S	S	T	L	A	A	V	I	A	Q	S	D	Q	K	V	L	F	I	D	A	D	L	R	R	G	Y	S	H	N	L	F	T	V	S	N	E	H	G	L	S	E	Y	L	A	G	K	D	E	L	N	K	V	I	Q	H	F	G	K
Query Conservation
Alig confidence																	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	K	I	P	Y	V	I	M	L	V	G	V	Q	G	.	.	.	.	.	T	T	A	G	K	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	V	Y	R	P	A	A	L	E	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	L	G	Q	Q	I	G	V
Template Known Secondary structure			S	S	S	S								S			.	.	.	.	.													T	T											S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T
Template Predicted Secondary structure																	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.						.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.																			.	.	.	.	.	.	.	.	150
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640		.	.	.	.	.	.	.	.	.	650	.	.	.								.	.	.	.	.	.	660	.	.	.	.			.	.	.	.	.	670	.	.	.	.	.	.
Predicted Secondary structure																																				.														.	.	.	.	.	.	.												.	.
Query SS confidence																																				.														.	.	.	.	.	.	.												.	.
Query Sequence		G	G	F	D	V	I	T	R	G	Q	V	P	P	N	P	S	E	L	L	M	R	D	R	M	R	Q	L	L	E	W	A	N	D	H	.	Y	D	L	V	I	V	D	T	P	P	M	L	A	.	.	.	.	.	.	.	V	S	D	A	A	V	V	G	R	S	V	.	.	G	T	S	L	L	V	A	R	F	G	L	N
Query Conservation																																				.														.	.	.	.	.	.	.												.	.
Alig confidence			.	.	.	.												.	.	.	.	.														.														.	.	.	.	.	.	.												.	.
Template Conservation			.	.	.	.												.	.	.	.	.
Template Sequence		P	.	.	.	.	V	Y	G	E	P	G	E	K	D	V	V	.	.	.	.	.	G	I	A	K	R	G	V	E	K	F	L	S	E	K	M	E	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	A	A	L	L	E	E	M	K	N	I	Y	E	A	I	K	P	D	E	V	T	L	V	I	D	A	S	I	G
Template Known Secondary structure			.	.	.	.					T	T						.	.	.	.	.													T	T		S									S			T	T																			S								G	G	G	G
Template Predicted Secondary structure			.	.	.	.												.	.	.	.	.
Template SS confidence
		155					.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	K	E	V	S	L	S	M	Q	R	L	E	Q	A	G	V	N	I	K	G	A	I	L	N	G	V	I
Query Conservation
Alig confidence			.														.	.
Template Conservation			.														.	.
Template Sequence		Q	.	K	A	Y	D	L	A	S	K	F	N	Q	A	S	.	.	K	I	G	T	I	I	I	T	K	M	D
Template Known Secondary structure		G	.	G													.	.	T	T								T	T
Template Predicted Secondary structure			.														.	.
Template SS confidence
		226		.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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