Job Description P0AGI1 Confidence 97.89% Date Thu Jan 5 11:29:13 GMT 2012 Rank 2 Aligned Residues 290 % Identity 10% Template d1l7va_ SCOP info ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC Resolution 3.20

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Query Sequence		R	R	Y	F	T	K	A	W	L	M	E	Q	K	S	L	I	A	L	L	V	L	I	A	I	V	S	T	L	S	P	N	F	F	T	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	F	N	I	L	Q	Q	T	S	V	N	A	I	M	A	V	G	M	T	L	V	I	L	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation
Template Sequence		R	Q	Q	Q	R	Q	N	I	R	W	L	L	C	L	S	V	L	X	L	L	A	L	L	L	S	L	C	A	G	E	Q	W	I	S	P	G	D	W	F	T	P	R	G	E	L	F	V	W	Q	I	R	L	P	R	T	L	A	V	L	L	V	G	A	A	L	A	I	S	G	A	V	X	Q	A	L	F	E	N	P	L
Template Known Secondary structure																													B	S	S	S	B			S	G	G	G	S	S	T	T	T	T	T					T																											T		T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		T	S	G	I	D	L	S	V	G	S	L	L	A	L	T	G	A	V	A	A	S	I	V	G	I	E	V	N	A	L	V	A	V	A	A	A	L	A	L	G	A	A	I	G	A	V	T	G	V	I	V	A	K	G	R	V	Q	A	.	.	F	I	A	T	L	V	M	M	L	L	L	R	G	V	T	M	V	Y	T	N
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		A	E	P	G	L	L	G	V	S	N	G	A	G	V	G	L	I	A	A	V	L	L	G	Q	G	Q	L	P	N	W	A	L	G	L	C	A	I	A	G	A	L	I	I	T	L	I	L	L	R	F	A	R	R	H	L	S	T	S	R	L	L	L	A	G	V	A	L	G	I	I	C	S	A	L	X	T	W	A	I	Y
Template Known Secondary structure				T	T	T	T	T															T	S		T	T																												T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	P	V	N	T	G	F	T	E	N	A	D	L	F	G	W	F	G	I	G	R	P	L	G	V	P	T	P	V	W	I	M	G	I	V	F	L	A	A	W	Y	M	L	H	H	T	R	L	G	R	Y	I	Y	A	L	G	G	N	E	A	A	T	R	L	S	G	I	N	V	N	K	I	K	I	I	V	Y	S	L
Query Conservation
Alig confidence					.																																											.	.	.	.	.	.
Template Conservation					.																																											.	.	.	.	.	.
Template Sequence		F	S	T	.	S	V	D	L	R	Q	L	X	Y	W	X	X	G	G	F	G	G	V	D	W	R	Q	S	W	L	X	L	A	L	I	P	V	L	L	W	I	C	C	Q	S	R	P	.	.	.	.	.	.	X	N	X	L	A	L	G	E	I	S	A	R	Q	L	G	L	P	L	W	F	W	R	N	V	L	V	A	A
Template Known Secondary structure					.												T				T	T			G	G	G																					.	.	.	.	.	.														T	T
Template Predicted Secondary structure					.																																											.	.	.	.	.	.
Template SS confidence
		166	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.											.	.	.	.	.
Query SS confidence														.	.											.	.	.	.	.
Query Sequence		C	G	L	L	A	S	L	A	G	I	I	E	.	.	V	A	R	L	S	S	A	Q	P	T	.	.	.	.	.	A	G	T	G	Y	E	L	D	A	I	A	A	V	V	L	G	G	T	S	L	A	G	G	K	G	R	I	V	G	T	L	I	G	A	L	I	L	G	F	L	N	N	G	L	N	L	L	G	V	S	S
Query Conservation														.	.											.	.	.	.	.
Alig confidence														.	.											.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	W	X	V	G	V	S	V	A	L	A	G	A	I	G	F	I	G	L	V	I	P	H	I	L	R	L	C	G	L	T	D	H	R	V	L	L	P	G	C	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	S	A	L	L	L	A	D	I	V	A	R	L	A	L	A	A	A	E	L	P	I
Template Known Secondary structure																		S	S	S	S									T	T			S												.	.	.	.	.	.	.	.	.	.	.	.	.															S		S	S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.														.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	Q	M	I	V	K	A	V	V	I	L	L	A	V	L	V	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	V	T	A	T	L	G	A	P	V	F	I	W	L	L	L	K	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions