Job Description P0AGI1 Confidence 4.28% Date Thu Jan 5 11:29:13 GMT 2012 Rank 25 Aligned Residues 201 % Identity 10% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		T	Q	T	V	S	G	R	R	Y	F	T	K	A	W	L	M	E	Q	K	S	L	I	A	L	L	V	L	I	A	I	V	S	T	L	S	P	N	F	F	T	I	N	N	L	F	N	I	L	Q	Q	T	S	V	N	A	I	M	A	V	G	M	T	L	V	I	L	.	T	S	G	I	D	L	S	V	G	S	L	L	A
Query Conservation																																																																				.
Alig confidence																																																																				.
Template Conservation
Template Sequence		R	A	G	F	E	E	Y	S	I	E	P	H	S	I	P	L	T	L	I	G	A	A	L	L	W	F	G	W	F	G	F	N	G	G	S	A	L	A	A	N	D	V	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S	L	G	I	V	S	G	A
Template Known Secondary structure			T	T	T	T	T	S					S																						G	G	G	S	S	S	S																													S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		L	T	G	A	V	A	A	S	I	V	G	I	E	V	N	A	L	V	A	V	A	A	A	L	A	L	G	A	A	I	G	A	V	T	G	V	I	V	A	K	G	R	V	Q	A	.	.	.	F	I	A	T	L	V	M	M	L	L	L	R	G	V	T	M	V	Y	T	N	G	S	P	V	N	T	G	F	T	E	N	A
Query Conservation																																															.	.	.
Alig confidence																																						.									.	.	.
Template Conservation																																						.
Template Sequence		I	A	G	L	A	A	I	T	P	A	A	G	F	V	D	V	K	G	A	I	V	I	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	.	R	I	K	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L	F
Template Known Secondary structure									T	T	T	T	T	T																								.				T	T				T	T																											S				G	G	G
Template Predicted Secondary structure																																						.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	F	G	W	F	G	I	G	R	P	L	G	V	P	T	P	V	W	I	M	G	I	V	F	L	A	A	W	Y	M	L	H	H	T	R	L	G	R	Y	I	Y	A	L	G	G	N	E	A	A
Query Conservation
Alig confidence										.																												.	.	.
Template Conservation										.																												.	.	.
Template Sequence		G	N	P	Q	L	L	V	S	.	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L	A	K	A	V	D	A	A	V	.	.	.	G	L	R	V	S	S	Q	E	E	Y	V
Template Known Secondary structure		T								.																											T	.	.	.		S	B
Template Predicted Secondary structure										.																												.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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