Job Description P76147 Confidence 99.94% Date Thu Jan 5 12:19:41 GMT 2012 Rank 12 Aligned Residues 152 % Identity 30% Template c3qyyB_ PDB info PDB header:signaling protein/inhibitor Chain: B: PDB Molecule:response regulator; PDBTitle: a novel interaction mode between a microbial ggdef domain and the bis-2 (3, 5 )-cyclic di-gmp Resolution 1.90 Å

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		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		Q	V	A	L	R	A	D	F	D	F	L	T	Q	V	Y	S	R	S	G	L	Y	E	A	L	K	S	P	S	L	K	Q	.	.	.	T	Q	H	L	T	V	M	L	L	D	I	D	Y	F	K	S	I	N	D	N	Y	G	H	E	C	G	D	K	V	L	S	V	F	A	R	H	I	Q	K	I	V	G	D	K	G	L
Query Conservation																																	.	.	.
Alig confidence																																	.	.	.
Template Conservation
Template Sequence		D	L	K	R	H	A	L	F	D	P	L	T	E	A	L	N	R	R	G	C	E	Q	A	M	R	D	S	V	T	A	A	Q	R	E	G	W	P	F	V	L	F	V	L	D	M	D	N	L	K	P	I	N	D	R	F	G	H	L	A	G	D	R	V	L	V	R	L	V	E	S	A	Y	G	W	L	G	A	Q	D	W
Template Known Secondary structure									B		T	T	T		S	B																			T												S	S																										T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	R	M	G	G	E	E	F	A	V	A	V	P	S	V	N	P	V	D	G	L	L	M	A	E	K	I	R	K	G	V	E	L	Q	P	F	T	W	Q	Q	K	T	L	Y	L	T	V	S	I	G	V	G	S	G	R	A	S	Y	L	T	L	T	D	D	F	N	K	L	M	V	E	A	D	T	C	L	Y	R	S
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Sequence		I	G	R	W	G	G	D	E	F	L	I	G	V	H	A	S	E	D	E	A	T	L	K	L	N	Q	W	L	S	M	L	E	E	A	P	L	.	.	.	.	.	.	.	.	.	.	H	V	S	A	G	S	A	V	C	.	.	.	.	.	E	V	G	I	D	A	T	E	L	Y	R	R	A	D	A	A	M	Y	R	A
Template Known Secondary structure							T	T								S																						.	.	.	.	.	.	.	.	.	.										.	.	.	.	.		T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.											.	.	.	.	250	.	.	.	.						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		298	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	D	G	R	N	R	T	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	S	G	G	R	R	L	V	R
Template Known Secondary structure				T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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