Job Description P76147 Confidence 50.75% Date Thu Jan 5 12:19:41 GMT 2012 Rank 49 Aligned Residues 103 % Identity 28% Template c2r8kB_ PDB info PDB header:replication, transferase/dna Chain: B: PDB Molecule:dna polymerase eta; PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna Resolution 3.30 Å

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		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.																						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	M	L	L	D	I	D	Y	F	K	S	I	N	D	N	Y	G	H	E	C	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	V	L	S	V	F	A	R	H	I	Q	K	I	V	G	D	K	G	L	V	A	R	M	G	G	E	E	F	A	V	A	V	P	S	V	N	P
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	P	I	H	T	A	V	F	K	K	G	E	D	F	W	Q	Y	H	D	G	C	G	S	W	V	Q	D	P	A	K	Q	I	S	V	E	D	H	K	V	S	L	E	P	Y	R	R	E	S	R	K	A	L	K	I	F	K	S	A	C	D	L	V	E	R	A	S	I	D	E	V	F	L	D	L	G	R	I	C	F
Template Known Secondary structure												T	T		S	S					T	T		S	T	T		S	S	T	T	S				T	T	S																					T	T		S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		236	.																																																																									.	.	240	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	L	M	A	E
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	M	L	M	F	D	N	E	Y	E	L	T	G	D	L	K	L	K	D	A	L	S	N	I	R	E	A	F	I	G	G	N	Y	D	I	N	S	H	L	P	L	I	P	E	K	I	K	S	L	K	F	E	G	D	V	F	N	P	E	G	R	D	L	I	T	D	W	D	D	V	I	L	A	L	G	S	Q	V	C	K
Template Known Secondary structure									S					T	T							T												S		T	T	S	B						G	G	G	G	G				S	S					T	T				S		S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	R	K	G	V	E	L	Q	P	F	T	W	Q	Q	K	T	L	Y	L	T	V	S	I	G	V	G	S	G	R	A	S	Y	L	T	L	T	D	D	F	N	K	L	M	V	E	A	D	T	C	L	Y	R	S	K	K	D	G
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	R	D	S	I	K	D	I	L	.	.	.	.	.	.	.	.	G	Y	T	T	S	C	G	L	S	S	T	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	C	K	L	A	S	N	Y	K	K	P	D	A
Template Known Secondary structure											T	.	.	.	.	.	.	.	.										S				.	.	.	.	.	.	.	.	.	.	.	.	.	.									S		S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.									.	.	.	260	.	.	.	.	.	.	.	.	.															270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions