 |
Job Description | P77302 | Confidence | 43.78% | Date | Thu Jan 5 12:27:30 GMT 2012 |
Rank | 92 | Aligned Residues | 85 |
% Identity | 22% | Template | c3gqcB_ |
PDB info |
PDB header:transferase/dna | Chain: B: PDB Molecule:dna repair protein rev1; |
PDBTitle: structure of human rev1-dna-dntp ternary complex
|
Resolution | 2.50 Å |
|
 |
  |   |
302 | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | |
|
|
. | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | G | H | S | K | G | D | E | V | L | C | A | L | A | R | T | L | E | S | C | A | R | K | G | D | L | V | F | R | W | G | G | E | E | F | V | L | L | L | P | R | T | P | L | D | . |
. |
. |
T | A | L | S | L | A | E | T | I | R | V | S | V | A | K | V | S | I | S | G | L | P | R | F | T | V | S | I | G | V | A | H |
Query Conservation |   |
  |
|   |   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   | . | . | . |
|
|   |   |
|
|
|
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |
| . | . | . | . | . |
|   |   |   |
|
|
|
|
|   |
Template Sequence |   |
Y | D | F | H | A | Y | K | E | V | A | Q | T | L | Y | E | T | L | A | S | Y | T | H | N | . |
. |
. |
I | E | A | V | S | C | D | E | A | L | V | D | I | T | E | I | L | A | E | T | K | L | T | P | D | E | F | A | N | A | V | R | M | E | I | K | D | Q | T | . |
. |
. |
. |
. |
K | C | A | A | S | V | G | I | G | S |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |
| . | . | . |  |  |  |  |  | T | T |  |  |  |  |  |
|  |  |  |  |  | T | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | S |
|
|  |  |  |  |  |  | S |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
541 | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | |
|
|
. | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 610 | . | . |
  |
  |   |
379 | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | E | G | N | E | S | I | D | E | L | F | K | R | V | D | D | A | L | Y | R | A | K | N | D | G |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . |
|   |   |
|
|
|
|
|
|   |   |
|
|
|   |
|
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | I | L | L | A | R | M | A | T | R | K | A | K | P | D | G |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | S |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
613 | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|