Job Description P77302 Confidence 99.50% Date Thu Jan 5 12:27:30 GMT 2012 Rank 19 Aligned Residues 233 % Identity 10% Template c3gdiB_ PDB info PDB header:transcription Chain: B: PDB Molecule:period circadian protein homolog 2; PDBTitle: mammalian clock protein mper2 - crystal struture of a pas2 domain fragment Resolution 2.40 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	I	V	S	P	F	E	E	Q	L	I	Y	A	N	S	A	A	K	L	L	M	Q	D	L	T	F	S	Q	L	R	T	G	P	Y	S	V	S	S	Q	K	E	L	P	K	Y	L	S	D	L	Q	N	Q	H	D	I	I	E	I	L	T	V	Q	R	K	E	E	E	T	A	L	S	C	R	L	V	L	R	K	L
Query Conservation
Alig confidence																										.	.	.	.	.													.
Template Conservation																										.	.	.	.	.													.
Template Sequence		A	V	A	V	S	L	V	S	G	K	I	L	Y	I	S	N	Q	V	A	S	I	D	A	K	.	.	.	.	.	F	V	E	F	L	A	P	H	D	V	S	V	.	F	H	S	Y	T	T	P	Y	K	L	P	M	E	E	K	S	F	F	C	R	V	S	V	G	R	Y	Q	P	F	R	M	T	P	Y	L	V	K	E
Template Known Secondary structure							S	S	S										S	S						.	.	.	.	.	G	G	G	T	B		G	G	G				.					T	S	T	T	T
Template Predicted Secondary structure																										.	.	.	.	.													.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	T	E	P	V	I	I	F	E	G	I	E	A	P	A	T	L	G	L	K	A	S	R	S	A	N	Y	Q	R	K	K	Q	G	F	Y	A	R	F	F	L	T	N	S	A	P	M	L	L	I	D	P	S	R	D	G	Q	I	V	D	A	N	L	A	A	L	N	F	Y	G	Y	N	H	E	T	M	C	Q	K	H
Query Conservation
Alig confidence										.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	L	C	C	L	L	L	.	.	.	.	.	.	.	A	E	R	V	H	S	G	Y	E	A	P	R	I	P	P	E	K	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	T	T	H	T	P	N	C	L	F	Q	A	V	D	E	R	A	V	P	L	L	G	Y	L	P	Q	D	L	I	E	T	P
Template Known Secondary structure										.	.	.	.	.	.	.			B				T	T	S	T	T				G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	B						T	T						S							T	T	S	B
Template Predicted Secondary structure										.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.								.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330														.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.																																						.	.	.
Query SS confidence																										.	.	.																																						.	.	.
Query Sequence		T	W	E	I	N	M	L	G	R	R	V	M	P	I	M	H	E	I	S	H	L	P	G	G	.	.	.	H	K	P	L	N	F	V	H	K	L	A	D	G	S	T	R	H	V	Q	T	Y	A	G	P	I	E	I	Y	G	D	K	L	M	L	C	I	V	.	.	.	H	D	I	T	E	Q	K	R	L	E	E	Q	L
Query Conservation																										.	.	.																																						.	.	.
Alig confidence																										.	.	.																																						.	.	.										.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		V	L	V	Q	L	H	P	S	D	R	P	L	M	L	A	I	H	K	K	I	L	Q	A	G	G	Q	P	F	D	Y	S	P	I	R	F	R	T	R	N	G	E	Y	I	T	L	D	T	S	W	S	S	F	I	N	P	W	S	R	K	I	S	F	I	I	G	R	H	K	V	R	V	G	P	L	N	E	.	.	.	.
Template Known Secondary structure		T	G	G	G	B		T	T	T	T	T													T	T													T	T	S															T	T	T																	S	S	S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	A	A	H	H	D	A	M	T	G	L	L	N	R	R	Q	F	Y	H	I	T	E	P	G	Q	M	Q	H	L	A	I	A	Q	D
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	D	V	F	A	A	P	P	C	P	E	P	S	V	Q	E	L	T	E	Q	I	H	R	L	L	M	Q	P	V	P
Template Known Secondary structure		.	.	.	.	.	.		T	T	S			S	S																T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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