Job Description P77302 Confidence 98.68% Date Thu Jan 5 12:27:30 GMT 2012 Rank 58 Aligned Residues 124 % Identity 12% Template c2pdtD_ PDB info PDB header:circadian clock protein Chain: D: PDB Molecule:vivid pas protein vvd; PDBTitle: 2.3 angstrom structure of phosphodiesterase treated vivid Resolution 2.20 Å

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		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	P	A	T	L	G	L	K	A	S	R	S	A	N	Y	Q	R	K	K	Q	G	F	Y	A	R	F	F	L	T	N	S	A	P	M	L	L	I	D	P	S	R	D	G	Q	I	V	D	A	N	L	A	A	L	N	F	Y	G	Y	N	H	E	T	M	C	Q	K	H	T	W	E	I	N	M	L	G	R	R	V	M
Query Conservation
Alig confidence																									.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.
Template Sequence		I	M	G	Y	L	I	Q	I	M	N	R	P	N	P	Q	V	E	L	G	P	V	D	T	.	.	.	.	.	.	.	S	C	A	L	I	L	C	D	L	K	Q	K	D	T	P	I	V	Y	A	S	E	A	F	L	Y	M	T	G	Y	S	N	A	E	V	L	G	R	N	C	R	F	L	Q	S	P	D	G	M	V	K
Template Known Secondary structure													S				S				S			T	.	.	.	.	.	.	.	T	S	S						T	T	S	T	T																		S	T	T	T	T	T	S		G	G	G	G	G	S	T	T	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.								70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
														188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	P	I	M	H	E	I	S	H	L	P	G	G	H	K	P	L	N	F	V	H	K	L	A	D	G	S	T	R	H	V	Q	T	Y	A	G	P	I	E	I	Y	G	D	K	L	.	.	M	L	C	I	V	H	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Template Conservation
Template Sequence		P	K	S	T	R	K	Y	V	D	S	N	T	I	N	T	M	R	K	A	I	D	R	N	A	E	V	Q	V	E	V	V	N	F	K	K	N	G	Q	R	F	V	N	F	L	T	M	I	P	V	R	D	E	T	G	E	Y	R	Y	S	M	G	F	Q	C	E
Template Known Secondary structure		T	T				S	S	S															T												T	T																T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions