Job Description P77302 Confidence 99.36% Date Thu Jan 5 12:27:30 GMT 2012 Rank 22 Aligned Residues 284 % Identity 10% Template c1wa9A_ PDB info PDB header:circadian rhythm Chain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of the pas repeat region of the2 drosophila clock protein period Resolution 3.15 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.							.
Predicted Secondary structure																																																																											.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.
Query Sequence		V	W	I	V	S	P	F	E	E	Q	L	I	Y	A	N	S	A	A	K	L	L	M	Q	D	L	T	F	S	Q	L	R	T	G	P	Y	S	V	S	S	Q	K	E	L	P	K	Y	L	S	D	L	Q	N	Q	H	D	I	I	E	I	L	T	V	Q	R	K	E	E	E	T	A	L	S	C	.	.	.	.	.	.	R
Query Conservation																																																																											.	.	.	.	.	.
Alig confidence																																																																											.	.	.	.	.	.
Template Conservation
Template Sequence		C	C	V	I	S	M	H	D	G	I	V	L	Y	T	T	P	S	I	T	D	V	L	G	Y	P	R	D	M	W	L	G	R	S	F	I	D	F	V	H	L	K	D	R	A	T	F	A	S	Q	I	T	T	G	I	A	K	S	T	F	C	V	M	L	R	R	Y	R	G	L	K	S	G	G	F	G	V	I	G	R	P
Template Known Secondary structure							T	T	T		B						T	T									T	T	S	S	T	T	S	B	G	G	G	G	B		T	T	T								T	T	S														S				S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	L	R	K	L	T	E	T	E	P	V	I	I	F	E	G	I	E	A	P	A	T	L	G	L	K	A	S	R	S	A	N	Y	Q	R	K	K	Q	G	F	Y	A	R	F	F	L	T	N	S	A	P	M	L	L	I	D	P	S	R	D	G	Q	I	V	D	A	N	L	A	A	L	N	F	Y	G	Y	N	H	E
Query Conservation
Alig confidence																																																										.
Template Conservation																																																										.
Template Sequence		V	S	Y	E	P	F	R	L	G	L	T	F	R	E	A	P	E	E	A	R	S	N	G	T	N	M	L	L	V	I	C	A	T	P	I	K	S	S	Y	K	V	P	D	E	I	L	S	Q	K	S	P	K	F	A	I	R	.	H	T	A	T	G	I	I	S	H	V	D	S	A	A	V	S	A	L	G	Y	L	P	Q
Template Known Secondary structure													B											S															S			S	T	T		B			T	T	S							.			T	T		B						G	G	G
Template Predicted Secondary structure																																																										.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.		.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																	.	.	.	.	.	.																											.	.
Query SS confidence																																	.	.	.	.	.	.																											.	.
Query Sequence		T	M	C	Q	K	H	T	W	E	I	N	M	L	G	R	R	V	M	P	I	M	H	E	I	S	H	L	P	G	G	H	.	.	.	.	.	.	K	P	L	N	F	V	H	K	L	A	D	G	S	T	R	H	V	Q	T	Y	A	G	P	I	E	I	.	.	Y	G	D	K	L	M	L	C	I	V	H	D	I	T	E
Query Conservation																																	.	.	.	.	.	.																											.	.
Alig confidence																																	.	.	.	.	.	.																											.	.
Template Conservation
Template Sequence		D	L	I	G	R	S	I	M	D	F	Y	H	H	E	D	L	S	V	M	K	E	T	Y	E	T	V	M	K	K	G	Q	T	A	G	A	S	F	C	S	K	P	Y	R	F	L	I	Q	N	G	C	Y	V	L	L	E	T	E	W	T	S	F	V	N	P	W	S	R	K	L	E	F	V	V	G	H	H	R	V	F	Q
Template Known Secondary structure				T	T	S	B	G	G	G	G	B		T	T	T															T	T	S	T	T													T	T	S															T	T	T
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	R	L	E	E	Q	L	E	H	A	A	H	H	D	A	M	T	G	L	L	N	R	R	Q	F	Y	H	I	T	E	P	G	Q	M	Q	H	L	A	I	A	Q	D	Y	S	L	L	L	I	D	T	D	R	F	K	H	I	N	D	L	Y	G	H	S	K	G	D	E	V	L	C	A	L	A	R	T	L	E	S	C
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	K	Q	C	N	V	F	E	A	A	P	T	C	K	L	K	I	S	E	E	A	Q	S	R	N	T	R	I	K	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	K	R	L	A	E	T	V	S	R	P	S	D	T	V	K	Q	E	V	S	R	R	C	Q	A	L
Template Known Secondary structure				S	S	S		T	T	S										G	G	G	S	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S							T	T	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.																						530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions