Job Description P39389 Confidence 99.86% Date Thu Jan 5 12:00:20 GMT 2012 Rank 174 Aligned Residues 339 % Identity 14% Template d2gsaa_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.40

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		S	S	I	V	P	L	S	K	S	T	P	D	V	E	A	.	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S
Query Conservation																	.
Alig confidence																	.																	.	.	.																									.	.	.	.	.	.
Template Conservation																																		.	.	.																									.	.	.	.	.	.
Template Sequence		N	R	Y	I	D	Y	V	G	T	W	G	P	A	I	C	G	H	A	H	P	E	V	I	E	A	L	K	V	A	M	E	K	.	.	.	G	T	S	F	G	A	P	C	A	L	E	N	V	L	A	E	M	V	N	D	A	V	P	S	.	.	.	.	.	.	I	E	M	V	R	F	V	N	S	G	T	E	A	C	M
Template Known Secondary structure							S	S	G	G	G	T	T	T	T	T		B	T													T	T	.	.	.		S			S	S																S	T	T	.	.	.	.	.	.		S						S	S
Template Predicted Secondary structure																																		.	.	.																									.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.										.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.
Predicted Secondary structure									.	.																	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.													.	.
Query SS confidence									.	.																	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.													.	.
Query Sequence		L	A	L	M	A	V	C	.	.	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	.	.	.	.	.	.	.	.	.	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	.	.	.	.	.	.	S	V	E	A	L	E	L	A	L	E	Q	W	.	.	P	I	K	G
Query Conservation									.	.																	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.													.	.
Alig confidence									.	.																	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		A	V	L	R	L	M	R	A	Y	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	M	F	L	V	K	A	G	S	G	V	A	T	L	G	L	P	S	S	P	G	V	P	K	K	T	T	A	N	T	L	T	T	P	Y	N	D	L	E	A	V	K	A	L	F	A	E	N	P	G	E	I	A	G
Template Known Secondary structure																				T	T					S		G	G	G		S	S								T	T			S		S	S	S						T	T						T	T										T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W
Query Conservation
Alig confidence																																																.	.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		V	I	L	E	P	I	V	G	N	S	G	F	I	V	P	D	A	G	F	L	E	G	L	R	E	I	T	L	E	H	D	A	L	L	V	F	D	E	V	M	T	G	F	R	I	A	.	.	.	.	.	Y	G	G	V	Q	E	K	F	G	V	T	P	D	L	T	T	L	G	K	I	I	G	G	G	L	P	V	G	A
Template Known Secondary structure						S	S	B		S	S	S		B				T	T												T	T								T	T	T	B	T	T	T	B	.	.	.	.	.	T	T						T	T				S						G	G	G	G	T	T	S
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	.	.	.	.	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																																																	.	.
Template Conservation																																																																					.	.
Template Sequence		Y	G	G	K	R	E	I	M	Q	L	V	A	P	A	G	P	M	Y	Q	A	G	T	L	S	G	N	P	L	A	M	T	A	G	I	K	T	L	E	L	L	R	Q	P	G	T	Y	E	Y	L	D	Q	I	T	K	R	L	S	D	G	L	L	A	I	A	Q	E	T	.	.	G	H	A	A	C	G	G	Q	V	S	G
Template Known Secondary structure										T	T	B	T	T	T	S	S	B					T	T	T	T																T	S	T	T																							T	.	.	T									T	T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.
		400	.	.	.													.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	L	W	.	.	.	.	.	.	.	.	.	.	.	.	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.							.
Template Conservation																																															.	.	.	.	.	.	.	.							.
Template Sequence		M	F	G	F	F	F	T	E	G	P	V	H	N	Y	E	D	A	K	K	S	D	L	Q	K	F	S	R	F	H	R	G	M	L	E	Q	G	I	Y	L	A	P	S	Q	F	E	.	.	.	.	.	.	.	.	A	G	F	T	S	L	.	A	H	T	E	E	D	I	D	A	T	L	A	A	A	R	T	V	M	S	A
Template Known Secondary structure							S	S	S					S					T	T	S															T	T					S	S	T	T	S	.	.	.	.	.	.	.	.						T	.	T																		T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.							.
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.									.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions