Job Description P39389 Confidence 99.90% Date Thu Jan 5 12:00:20 GMT 2012 Rank 150 Aligned Residues 324 % Identity 12% Template d2fnua1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.50

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		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	S	K	S	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A
Query Conservation
Alig confidence												.	.	.	.															.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation												.	.	.	.															.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		E	F	A	Y	S	E	P	C	L	D	.	.	.	.	K	E	D	K	K	A	V	L	E	V	L	N	S	K	.	.	.	.	.	Q	L	T	Q	G	K	R	S	L	L	F	E	E	A	L	C	E	F	L	G	V	.	.	.	.	.	.	.	K	H	A	L	V	F	N	S	A	T	S	A	L	L	T	L	Y	R	N
Template Known Secondary structure					S							.	.	.	.												T	S	S	.	.	.	.	.			S	S	S															T		.	.	.	.	.	.	.	S						S
Template Predicted Secondary structure												.	.	.	.															.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.					.	.	.	.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		188				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		V	.	.	.	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R
Query Conservation			.	.	.
Alig confidence			.	.	.																																																											.	.	.	.	.									.	.	.
Template Conservation																																																																.	.	.	.	.									.	.	.
Template Sequence		F	S	E	F	S	A	D	R	N	E	I	I	T	T	P	I	S	F	V	A	T	A	N	M	L	L	E	S	G	Y	T	P	V	F	A	G	I	K	N	D	G	N	I	D	E	L	A	L	E	K	L	I	N	E	R	T	K	A	I	V	S	V	.	.	.	.	.	D	Y	A	G	K	S	V	E	.	.	.	V	E
Template Known Secondary structure		S	S				T	T	S							S	S	S		T									T	T								B		T	T	S	S	B		G	G	G	S	G	G	G			T	T								.	.	.	.	.		G	G	G					.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.									.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.				.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	.
Query Conservation																																																																																	.
Alig confidence																							.	.	.	.																																																							.
Template Conservation																							.	.	.	.
Template Sequence		S	V	Q	K	L	C	K	K	H	S	L	S	F	L	S	D	S	S	H	A	L	.	.	.	.	G	S	E	Y	Q	N	K	K	V	G	G	F	A	L	A	S	V	F	S	F	H	A	I	K	P	I	T	T	A	E	G	G	A	V	V	T	N	D	S	E	L	H	E	K	M	K	L	F	R	S	H	G	M	L	K
Template Known Secondary structure											T								T	T		T	.	.	.	.	T				T	T			T	T	S	S	S	S								T	T	S	S	S			S	S							S												T	B	T	T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
																		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.								400
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	.	.	.	.	.	.	.	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.																							.	.												.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.																							.	.
Template Sequence		K	D	F	F	E	G	E	V	K	S	I	G	H	N	F	R	L	N	E	I	Q	S	A	L	G	L	S	Q	L	K	K	.	.	.	.	.	.	A	P	F	L	M	Q	K	R	E	E	A	A	L	T	Y	D	R	I	F	K	D	N	.	.	P	Y	F	T	P	L	H	P	L	L	K	D	K	S	S	N	H	L	Y
Template Known Secondary structure		S	S	S	S					S	S				B																T	T	.	.	.	.	.	.																				T	T		.	.	S	S				S	G	G	G		S	S					S
Template Predicted Secondary structure																																	.	.	.	.	.	.																							.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.							.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.																		.	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query Sequence		L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	C	L	R	I	N	C	.	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation
Template Sequence		P	I	L	M	H	Q	K	F	F	T	C	K	K	L	I	L	E	S	L	H	K	R	G	I	L	A	Q	V	H	Y	K	P	I	Y	Q	Y	Q	L	Y	Q	Q	L	F	N	T	A	P	L	K	S	A	E	D	F	Y	H	A	E	I	S	L	P	C	H	A	N	L	N	L	E	S	V	Q	N	I	A	H	S	V	L
Template Known Secondary structure							G	G	G	G	G	G											T	T				B						G	G	G	S																													T	T
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		463	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	V	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	F	E	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions