Phyre 2 alignment of P39389 with d1w7la

Job Description P39389
Confidence 100.00% Date Thu Jan 5 12:00:20 GMT 2012

Rank 22 Aligned Residues 379

% Identity 17% Template d1w7la_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 2.0

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	P	V	Q	R	P	V	E	I	T	Q	W	D	Q	V	L	D	M	L	E	A	H	S	D	S	S	I	V	P	L	S	K	S	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M
Query Conservation
Alig confidence																																					.	.																		.
Template Conservation																																					.	.																		.
Template Sequence	Q	L	Q	A	R	R	L	D	G	I	D	Y	N	P	W	V	E	F	V	K	L	A	S	E	H	D	V	V	N	L	G	Q	G	F	P	D	.	.	F	P	P	P	D	F	A	V	E	A	F	Q	H	A	V	S	G	.	D	F	M	L	N	Q	Y	T	K	T	F	G	Y	P	P	L	T	K	I	L	A	S	F	F
Template Known Secondary structure			S		G	G	G	T	T					T										T	S									S		S	.	.	S														T	S	S	.		G	G	G	G	S				T	T
Template Predicted Secondary structure																																					.	.																		.
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	160	.	.		.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.										.	.	.
Predicted Secondary structure				.						.																																																											.	.	.	.	.	.	.	.	.
Query SS confidence				.						.																																																											.	.	.	.	.	.	.	.	.
Query Sequence	L	D	S	.	G	S	V	V	T	.	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	.	.	.	.	.	.	.	.	.	G	I	S
Query Conservation				.						.																																																											.	.	.	.	.	.	.	.	.
Alig confidence				.						.																																																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	E	L	L	G	Q	E	I	D	P	L	R	N	V	L	V	T	V	G	G	Y	G	A	L	F	T	A	F	Q	A	L	V	D	E	G	D	E	V	I	I	I	E	P	F	F	D	C	Y	E	P	M	T	M	M	A	G	G	R	P	V	F	V	S	L	K	P	G	P	G	E	L	G	S	S	S	N	W	Q	L	D
Template Known Secondary structure					T													S																T	T								S			T	T								T	T															S			G	G	G
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence	P	M	E	L	A	G	K	F	T	.	.	S	R	T	K	A	L	V	L	N	T	P	N	N	P	L	G	K	V	F	S	R	E	E	L	E	L	V	A	S	L	C	Q	Q	H	D	V	V	C	I	T	D	E	V	Y	Q	W	M	V	Y	D	G	H	Q	H	I	S	I	A	S	L	P	G	M	W	E	R	T	L	T
Template Known Secondary structure										.	.	T	T								S	S		T	T	T																				T								T	T	T	T		B		T	T						G	G	G	S	T	T	T	G	G	G
Template Predicted Secondary structure										.	.
Template SS confidence
	164	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.

	309	310	.	.	.	.	.	.		.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.						.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure									.								.																																							.	.	.	.	.
Query SS confidence									.								.																																							.	.	.	.	.
Query Sequence	S	S	F	S	K	S	I	A	.	P	G	L	R	V	G	W	.	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	.	.	.	.	.	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C
Query Conservation									.								.																																							.	.	.	.	.
Alig confidence									.								.																																							.	.	.	.	.
Template Conservation
Template Sequence	I	G	S	A	G	T	F	S	A	T	G	W	K	V	G	W	V	L	G	P	D	H	I	M	K	H	L	R	T	V	H	Q	N	S	V	F	H	C	P	T	Q	S	Q	A	A	V	A	E	S	F	E	R	E	Q	L	L	F	R	Q	P	S	S	Y	F	V	Q	F	P	Q	A	M	Q	R	C	R	D	H	M	I	R
Template Known Secondary structure								S		G	G	G																					T	T	T	S																				T	T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
	242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

	382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.														.	410	.	.	.	.	.	.	.	.	.	420	.	.		.	.	.	.	.	.	.	430	.	.	.	.				.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.															.													.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.															.													.	.	.
Query Sequence	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	.	K	I	Q	V	A	A	G	S	I	F	S	A	.	.	.	S	G	K	Y	R	N	C	L	R	I
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.															.													.	.	.
Alig confidence						.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.															.													.	.	.
Template Conservation						.	.	.
Template Sequence	S	L	Q	S	V	.	.	.	G	L	K	P	L	I	P	Q	G	S	Y	F	L	I	T	D	I	S	D	F	K	R	K	M	P	D	L	P	G	A	V	D	E	P	Y	D	R	R	F	V	K	W	M	I	K	N	K	G	L	V	A	I	P	V	S	I	F	Y	S	V	P	H	Q	K	H	F	D	H	Y	I	R	F
Template Known Secondary structure				T	T	.	.	.	T							S	B	S	S																				T	T																						G	G	G	G	S						T	T	S		S
Template Predicted Secondary structure						.	.	.
Template SS confidence
	323	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

	445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	C	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence	C	F	V	K	.	D	E	A	T	L	Q	A	M	D	E	K	L	R	K	W	K	V	E
Template Known Secondary structure					.
Template Predicted Secondary structure					.
Template SS confidence
	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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