Phyre 2 alignment of P39389 with d1svva

Job Description P39389
Confidence 99.95% Date Thu Jan 5 12:00:20 GMT 2012

Rank 103 Aligned Residues 332

% Identity 12% Template d1svva_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 2.10

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	V	P	L	S	K	S	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L
Query Conservation
Alig confidence															.	.	.	.	.	.																																				.	.	.	.	.
Template Conservation															.	.	.	.	.	.																																				.	.	.	.	.
Template Sequence	P	Y	S	F	V	N	D	Y	S	V	G	X	H	P	.	.	.	.	.	.	K	I	L	D	L	X	A	R	D	N	X	T	Q	H	A	G	Y	G	Q	D	S	H	C	A	K	A	A	R	L	I	G	E	L	L	E	.	.	.	.	.	R	P	D	A	D	V	H	F	I	S	G	G	T	Q	T	N	L	I	A	C
Template Known Secondary structure					S		S		S	S					.	.	.	.	.	.										T	T					S	T	T		S															T	.	.	.	.	.		T	T	S						S
Template Predicted Secondary structure															.	.	.	.	.	.																																				.	.	.	.	.
Template SS confidence
	15	.	.	.	.	20	.	.	.	.	.	.	.	.							.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																																				.	.	.	.
Query SS confidence																						.	.																																				.	.	.	.
Query Sequence	M	A	V	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	.	.	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	.	.	.	.	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P
Query Conservation																						.	.																																				.	.	.	.
Alig confidence																						.	.																		.																		.	.	.	.
Template Conservation																																									.
Template Sequence	S	L	A	L	R	P	W	E	A	V	I	A	T	Q	L	G	H	I	S	T	H	E	T	G	A	I	E	A	T	G	H	K	V	V	T	A	P	C	P	D	.	G	K	L	R	V	A	D	I	E	S	A	L	H	E	N	R	S	E	H	X	V	I	P	K	L	V	Y	I	S	N	T	T	E	V	G	T	Q	Y	T
Template Known Secondary structure						T	T							T	T	S					S	S	T	T					T	T									T	T	.	S														S		S	T	T	S										S	S		T	T	S
Template Predicted Secondary structure																																									.
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.

	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	Q	E	L	E	D	I	S	A	S	C	K	E	H	G	L	Y	L	F	L	D	G	A	R	L	A	S	A	L	S	S	P	V	N	D	L	T	L	A	D	I	A	R	L	T	D	X	F	Y	I	G	A	T	K	A	G	G	X	F	G	E	A	L	I	I	L	N	D	A	L	K	P	N	A	R	H	L	I	K	Q
Template Known Secondary structure															T								T	T						T	S	T	T													S							T	T	T	T		S	S								S	G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q	L
Query Conservation
Alig confidence																				.	.																											.	.	.																			.
Template Conservation																				.	.																											.	.	.																			.
Template Sequence	R	G	A	L	X	A	K	G	W	L	L	G	I	Q	F	E	V	L	X	.	.	K	D	N	L	F	F	E	L	G	A	H	S	N	K	X	A	A	I	L	K	A	G	L	E	A	C	.	.	.	G	I	R	L	A	W	P	S	A	S	N	Q	L	F	P	I	L	E	.	N	T	X	I	A	E	L	N	N	D	F
Template Known Secondary structure	T	T				T	T	T											T	.	.	S	T	T																							T	.	.	.	T			B	S	S			S	S	S				B				.								T	T	T
Template Predicted Secondary structure																				.	.																											.	.	.																			.
Template SS confidence
	243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.

	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	.	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E
Query Conservation																													.
Alig confidence												.	.	.	.	.	.	.	.										.
Template Conservation												.	.	.	.	.	.	.	.
Template Sequence	D	X	Y	T	V	E	P	L	K	D	G	.	.	.	.	.	.	.	.	T	C	I	X	R	L	C	T	S	W	A	T	E	E	K	E	C	H	R	F	V	E	V	L	K	R
Template Known Secondary structure									T	T	T	.	.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.
Template SS confidence
	317	.	.	320	.	.	.	.	.	.	.									.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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