Phyre 2 alignment of P39389 with d1pmma

Job Description P39389
Confidence 99.67% Date Thu Jan 5 12:00:20 GMT 2012

Rank 238 Aligned Residues 288

% Identity 15% Template d1pmma_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Pyridoxal-dependent decarboxylase

Resolution 2.00

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.													.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.																																					.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.																																					.
Query Sequence	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	.	.	.	.	.	.	.	.	.	.	.	.	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	.	T	G	I	S	V	E	A	L	E	L	A	L	E	Q
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.																																					.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation
Template Sequence	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E
Template Known Secondary structure				S	S																								T				S							S	S												T	T									B	T	T	B		S												T
Template Predicted Secondary structure
Template SS confidence
	121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.							.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																					.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.
Query Sequence	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	.	.	.	.	.	.	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S
Query Conservation																																					.	.	.	.	.	.
Alig confidence												.	.									.	.	.													.	.	.	.	.	.
Template Conservation												.	.									.	.	.
Template Sequence	N	T	I	G	V	V	P	T	F	G	V	.	.	T	Y	T	G	N	Y	E	F	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H
Template Known Secondary structure	T							B	B	S		.	.	T	T	T		B	B			.	.	.																										T	T	G	G	G	T						T	T				S	T	T	S	T	T								T	T
Template Predicted Secondary structure												.	.									.	.	.
Template SS confidence
	201	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.												.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	.	.	.	.	.	.	.	.	.	.	.	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D
Template Known Secondary structure	T	T	T				S	S							S	S	G	G	G	S		G	G	G							T	T								S			S		B	S
Template Predicted Secondary structure
Template SS confidence
	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

	382	.	.	.	.	.	.	.	390	.	.	.	.	.	.					.	.	.	400	.	.	.	.	.	.	.	.					.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.	.
Predicted Secondary structure																.	.	.	.													.	.	.	.																																							.
Query SS confidence																.	.	.	.													.	.	.	.																																							.
Query Sequence	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	.	.	.	.	K	G	G	F	L	L	W	I	E	L	P	E	.	.	.	.	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	.	A	L	P	L	S	E
Query Conservation																.	.	.	.													.	.	.	.																																							.
Alig confidence						.	.									.	.	.	.													.	.	.	.																		.																					.
Template Conservation						.	.																																														.
Template Sequence	E	I	A	K	L	.	.	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	.	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D
Template Known Secondary structure				T	T	.	.	S										T	T	T	B	S	S								T	T				S	S											T	T	T		B	.								T	T		T	T										T	T
Template Predicted Secondary structure						.	.																																														.
Template SS confidence
	356	.	.	.	360			.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.		.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

	453	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	433	.	.	.	.	.	.	440	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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