Job Description P39389 Confidence 99.93% Date Thu Jan 5 12:00:20 GMT 2012 Rank 123 Aligned Residues 323 % Identity 14% Template d1mdoa_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.70

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		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	V	P	L	S	K	S	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A
Query Conservation
Alig confidence							.	.																						.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation							.	.																						.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		D	F	L	P	F	.	.	S	R	P	A	X	G	A	E	E	L	A	A	V	K	T	V	L	D	S	G	W	.	.	.	.	.	.	.	.	.	I	T	T	G	P	K	N	Q	E	L	E	A	A	F	C	R	L	T	G	N	.	.	.	.	.	.	.	Q	Y	A	V	A	V	S	S	A	T	A	G	X	H	I	A
Template Known Secondary structure				B		S	.	.																				T		.	.	.	.	.	.	.	.	.		S	S	S																	.	.	.	.	.	.	.	S						S
Template Predicted Secondary structure							.	.																						.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.										.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		185	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		L	M	A	V	.	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K
Query Conservation						.
Alig confidence						.																																			.	.																										.	.									.	.	.
Template Conservation																																									.	.																										.	.									.	.	.
Template Sequence		L	X	A	L	G	I	G	E	G	D	E	V	I	T	P	S	X	T	W	V	S	T	L	N	X	I	V	L	L	G	A	N	P	V	X	V	D	V	D	.	.	R	D	T	L	X	V	T	P	E	H	I	E	A	A	I	T	P	Q	T	K	A	I	I	P	V	.	.	H	Y	A	G	A	P	A	D	.	.	.	L
Template Known Secondary structure					T	T			T	T							S	S	S											T	T								B		.	.	T	T	T			B											T	T							B	.	.		G	G	G					.	.	.
Template Predicted Secondary structure																																									.	.																										.	.									.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.				.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																															.	.	.	.	.																																											.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		D	A	I	Y	A	L	G	E	R	Y	G	I	P	V	I	E	D	A	A	H	A	T	G	T	S	Y	K	G	R	.	.	.	.	.	H	I	G	A	R	G	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	G	G	I	V	V	T	D	N	P	Q	F	A	D	K	L	R	S	L	K	F	H	G	L	G
Template Known Secondary structure												T			B					T	T		T	T				T	T		.	.	.	.	.		T	T	S	S	S								T	T	S	S	S		S	S	S							S												T	B	T	T
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
												340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.								400	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	.	.	.	.	.	.	.	F	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.																							.	.												.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.																							.	.
Template Sequence		V	D	Q	A	E	V	L	A	P	G	Y	K	Y	N	L	P	D	L	N	A	A	I	A	L	A	Q	L	Q	K	.	.	.	.	.	.	L	D	A	L	N	A	R	R	A	A	I	A	A	Q	Y	H	Q	A	X	A	D	L	.	.	P	F	Q	P	L	S	L	P	S	W	E	H	I	H	A	W	H	L	F	I	I
Template Known Secondary structure								S	S				B																	T	.	.	.	.	.	.																					T	S	.	.	S								S	S							S
Template Predicted Secondary structure																															.	.	.	.	.	.																							.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.							.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		403	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.																		.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure								.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence								.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		W	I	E	L	P	E	.	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	Y	R	N	C	L	R	I	N	C	A	.	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E
Query Conservation								.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence								.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		R	V	D	E	A	R	C	G	I	T	R	D	A	L	X	A	S	L	K	T	K	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	T	L	P	D	T	E	W	N	S	E	R	I	C	S	L	P	L	F	P	D	X	T	E	S	D	F	D	R	V	I	T	A	L	H	Q
Template Known Secondary structure									S	S												T	T	B			B						G	G	G	S							S	T	T											T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		464	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		382	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions