Phyre 2 alignment of P39389 with d1lc5a

Job Description P39389
Confidence 100.00% Date Thu Jan 5 12:00:20 GMT 2012

Rank 74 Aligned Residues 337

% Identity 14% Template d1lc5a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.46

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	H	S	D	S	S	I	V	P	L	S	K	S	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N
Query Conservation
Alig confidence																						.	.	.	.	.	.																				.															.	.	.	.	.
Template Conservation																						.	.	.	.	.	.																				.															.	.	.	.	.
Template Sequence	G	I	S	P	D	Q	L	L	D	F	S	A	N	I	N	P	L	G	M	P	V	.	.	.	.	.	.	S	V	K	R	A	L	I	D	N	L	D	C	I	E	R	Y	P	D	A	.	D	Y	F	H	L	H	Q	A	L	A	R	H	H	Q	.	.	.	.	.	V	P	A	S	W	I	L	A	G	N	G	E	T	E
Template Known Secondary structure	T	S		G	G	G	S				S	S				T	T					.	.	.	.	.	.									T	G	G	G	G	G	S				T	.	T													T	.	.	.	.	.	S		G	G	G					S	S
Template Predicted Secondary structure																						.	.	.	.	.	.																				.															.	.	.	.	.
Template SS confidence
	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40							.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.

	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P
Query Conservation
Alig confidence										.	.																																																										.
Template Conservation										.	.																																																										.
Template Sequence	S	I	F	T	V	A	S	G	L	.	.	K	P	R	R	A	M	I	V	T	P	G	F	A	E	Y	G	R	A	L	A	Q	S	G	C	E	I	R	R	W	S	L	R	E	A	D	G	W	Q	L	T	D	A	I	L	E	A	L	T	P	D	L	D	C	L	F	L	C	.	T	P	N	N	P	T	G	L	L	P	E
Template Known Secondary structure										.	.			S							S			T									T	T										G	G	G	T	T				T	T							T	T								.	S	S		T	T	T
Template Predicted Secondary structure										.	.																																																										.
Template SS confidence
	88	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.

	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	.	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y
Query Conservation																																																										.
Alig confidence																																								.	.																	.
Template Conservation																																								.	.
Template Sequence	R	P	L	L	Q	A	I	A	D	R	C	K	S	L	N	I	N	L	I	L	D	E	A	F	I	D	F	I	P	H	E	T	G	F	I	P	A	L	K	.	.	D	N	P	H	I	W	V	L	R	S	L	T	K	F	Y	A	I	P	G	L	R	L	G	Y	L	V	N	S	D	D	A	A	M	A	R	M	R	R	Q
Template Known Secondary structure															T								T	T	G	G	G	S	T	T				S	G	G	G		T	.	.	T		T	T							S	T	T	T	T	T		T	T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

	339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q
Query Conservation
Alig confidence																					.	.	.																										.	.	.																			.	.
Template Conservation																					.	.	.																										.	.	.																			.	.
Template Sequence	Q	M	P	W	S	V	N	A	L	A	A	L	A	G	E	V	A	L	Q	D	.	.	.	S	A	W	Q	Q	A	T	W	H	W	L	R	E	E	G	A	R	F	Y	Q	A	L	C	Q	L	.	.	.	P	L	L	T	V	Y	P	G	R	A	N	Y	L	L	L	R	C	E	.	.	R	E	D	I	D	L	Q	R	R
Template Known Secondary structure	S		T	T		S											G	G	G		.	.	.																								T	S	.	.	.	T	T							S	S	S							S	.	.		T	T
Template Predicted Secondary structure																					.	.	.																										.	.	.																			.	.
Template SS confidence
	243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.

	419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V
Query Conservation
Alig confidence																			.	.										.	.
Template Conservation																			.	.										.	.
Template Sequence	L	L	T	Q	R	I	L	I	R	S	C	A	N	Y	P	G	L	D	.	.	S	R	Y	Y	R	V	A	I	R	.	.	S	A	A	Q	N	E	R	L	L	A	A	L	R	N	V	L
Template Known Secondary structure			T	T	T							T	T	S	T	T			.	.	T	T								.	.
Template Predicted Secondary structure																			.	.										.	.
Template SS confidence
	315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions