Return to main results Retrieve Phyre Job Id

Job DescriptionP39389
Confidence95.07%DateThu Jan 5 12:00:20 GMT 2012
Rank313Aligned Residues36
% Identity17%Templated1ku9a_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain DNA-binding protein Mj223
Resolution2.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60...
Predicted Secondary structure 









Query SS confidence 



































Query Sequence  SVRSLSQEHGVSISTVQQAYQTLETMKLITPQPRSG
Query Conservation 
 
 

  
 

  

  

  
   
 
    
 
Alig confidence 



































Template Conservation 
  


  
 



 

  
  

  


 
     
Template Sequence  TISDIXEELKISKGNVSXSLKKLEELGFVRKVWIKG
Template Known Secondary structure  T

TTS

TT
Template Predicted Secondary structure 








Template SS confidence 



































   43......50.........60.........70........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions