Phyre 2 alignment of P39389 with d1iuga

Job Description P39389
Confidence 99.94% Date Thu Jan 5 12:00:20 GMT 2012

Rank 108 Aligned Residues 322

% Identity 12% Template d1iuga_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 2.20

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	.
Query Conservation																																																																																.
Alig confidence																																				.	.	.	.	.																																								.
Template Conservation																																				.	.	.	.	.
Template Sequence	P	K	A	L	E	A	L	A	R	P	Q	L	H	H	R	T	E	A	A	R	E	V	F	L	K	A	R	G	L	L	R	E	A	F	R	.	.	.	.	.	T	E	G	E	V	L	I	L	T	G	S	G	T	L	A	M	E	A	L	V	K	N	L	F	A	P	G	E	R	V	L	V	P	V	Y	G	K	F	S	E
Template Known Secondary structure									S					T	T	S																			T	.	.	.	.	.		S	S							S																T	T									S
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
	14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.						.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.

		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y
Query Conservation	.
Alig confidence	.																											.	.	.	.														.												.	.	.
Template Conservation																												.	.	.	.														.												.	.	.
Template Sequence	R	F	Y	E	I	A	L	E	A	G	L	V	V	E	R	L	D	Y	P	Y	G	D	T	P	R	P	E	.	.	.	.	D	V	A	K	E	G	Y	A	G	L	L	L	V	.	H	S	E	T	S	T	G	A	L	A	D	.	.	.	L	P	A	L	A	R	A	F	K	E	K	N	P	E	G	L	V	G	A	D	M
Template Known Secondary structure									T	T										T	T					T	T	.	.	.	.	T	S			S	S		S						.	S			T	T	T	T					.	.	.													T	T
Template Predicted Secondary structure																												.	.	.	.														.												.	.	.
Template SS confidence
	89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300										.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.																	.
Query SS confidence																		.	.	.	.	.	.	.	.	.																	.
Query Sequence	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	.	.	.	.	.	.	.	.	.	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	.	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A
Query Conservation																		.	.	.	.	.	.	.	.	.																	.
Alig confidence																		.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence	V	T	S	L	L	V	G	E	V	A	L	E	A	M	G	V	D	A	A	A	S	G	S	Q	G	L	M	C	P	P	G	L	G	F	V	A	L	S	P	R	A	L	E	R	L	K	P	R	G	Y	Y	L	D	L	A	R	E	L	K	A	Q	K	E	G	E	S	A	W	T	P	A	I	N	L	V	L	A	V	A	A
Template Known Secondary structure	T	T	T	B	T	T	B				S	G	G	G	T		S													S														T					S	S	T	T										T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S
Query Conservation
Alig confidence						.	.	.																										.	.
Template Conservation						.	.	.																										.	.
Template Sequence	V	L	E	E	V	.	.	.	L	P	R	L	E	E	H	L	A	L	K	A	W	Q	N	A	L	L	Y	G	V	G	E	E	G	.	.	G	L	R	P	V	P	K	R	F	S	P	A	V	A	A	F	Y	L	P	E	G	V	P	Y	A	R	V	K	E	A	F	A	Q	R	G	A	V	I	A	G	G	Q	G	P	L
Template Known Secondary structure						.	.	.	G	G	G																						T	.	.	T				S		S	S	B		T	T								T	T												T	T	T								G	G	G
Template Predicted Secondary structure						.	.	.																										.	.
Template SS confidence
	242	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

	434	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence	A	S	G	K	Y	R	N	C	L	R	I	N	C	.	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R	A	M
Query Conservation														.
Alig confidence		.	.	.	.									.
Template Conservation		.	.	.	.
Template Sequence	K	.	.	.	.	G	K	V	F	R	L	S	L	M	G	A	Y	D	R	Y	E	A	L	G	V	A	G	M	F	R	E	V	L	E	E	I	L
Template Known Secondary structure	T	.	.	.	.	T	T								S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
	317					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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