Return to main results Retrieve Phyre Job Id

Job DescriptionP39389
Confidence100.00%DateThu Jan 5 12:00:20 GMT 2012
Rank65Aligned Residues350
% Identity17%Templated1d2fa_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   106...110.........120.........130.........140.........150.........160.. .......170.........180....
Predicted Secondary structure 














































.








Query SS confidence 
























































.





















Query Sequence  IVPLSKSTPDVEAPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLMLDS. GSVVTADDIIITSGCHNSMSLA
Query Conservation     
  
 
     
                     
    
   

   
      .        
 

 
   

   
Alig confidence 














.....





















.













.





















Template Conservation   
 
  
      
 ..... 
  
   
       
     .  

 


               
  
 
 
  
   
Template Sequence  LLPFTISDMDFATAP. . . . . CIIEALNQRLMHGVFGYSRWKN. DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSEL
Template Known Secondary structure 


SSS
SS


.....TT






S

.S




GGGS
Template Predicted Secondary structure 













.....










.






Template SS confidence 















































































   30.........40.... .....50.........60...... ...70.........80.........90.........100...
 
   185....190.........200.........210.........220...... ...230.........240.........250.........260.
Predicted Secondary structure 

















...




















Query SS confidence 









































. . .


































Query Sequence  LMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETG. . . ISVEALELALEQWPIKGIILVPNCNNPLGFIMPDA
Query Conservation     
   

 


  
 
          
     
      
... 
   
           
   
   



   
  
Alig confidence 









































...




















.












Template Conservation         

 

   
            
                                     .     
       
Template Sequence  IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC. SPQNPTGKVWTCD
Template Known Secondary structure  SS
TT
S

TT


SSS

TSTT.SS
TTT




TT
Template Predicted Secondary structure 

































.







Template SS confidence 















































































   104.....110.........120.........130.........140.........150.........160......... 170.........180..
 
   262.......270.........280.........290.........300.........310...... ...320........ .330........
Predicted Secondary structure 



























.




..
Query SS confidence 






















































.











. .









Query Sequence  RKRAVLSLAQRHDIVIFEDDVYGELATEYPRPRTIHSWDIDGRVLLCSSFSKSIA. PGLRVGWVAPGR. . YHDKLMHMKY
Query Conservation      
   
      

 

 
                     

   
 

   . 
 
 
 
    ..          
Alig confidence 




































.
















.











..









Template Conservation   
  
          

 
                  .          
 

     


 
                  
Template Sequence  ELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSN. VARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALK
Template Known Secondary structure  TT

TTTT
B
SSS



GGG.T

SS
ST
GGG


S
Template Predicted Secondary structure 
















.











Template SS confidence 















































































   183......190.........200.........210......... 220.........230.........240.........250.........260.
 
   339340.........350.........360.........370.........380.........390.........400........ .410.......
Predicted Secondary structure 






















.


Query SS confidence 





































































.








Query Sequence  AISSFNVPSTQMAAATFVLEGHYHRHIRRMRQIYQRNLALYTCWIREYFPCEICITRPKGGFLLWIELPE. QVDMVCVAR
Query Conservation            
      
                      
   
            
 

  
   
  .      
  
Alig confidence 

















































.


















.








Template Conservation                
                                   .      
         
            
Template Sequence  GRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFP. ELNWQIPQSTYLAWLDLRPLNIDDNALQK
Template Known Secondary structure  TTS


S



S.S





SB
S
GGG


Template Predicted Secondary structure 










.
















Template SS confidence 















































































   262.......270.........280.........290.........300.........310. ........320.........330.........340
 
   418.420.. .......430.........440.........450.........460.......
Predicted Secondary structure 
.














Query SS confidence 




.












































Query Sequence  QLCRM. KIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGEAVYR
Query Conservation   
   .

 
 

  
         



      
 
  

  
   
  
Alig confidence 




.













..









.

















Template Conservation   
    

 
 

  
    ..   



   .    
  

  
  

  
Template Sequence  ALIEQEKVAIMPGYTYGEEG. . RGFVRLNAGC. PRSKLEKGVAGLINAIRA
Template Known Secondary structure  TT

GGGG
GGG..TT

S.
Template Predicted Secondary structure 






..



.
Template SS confidence 


















































   341........350.........360 .........370 .........380........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions