Job Description P39389 Confidence 99.94% Date Thu Jan 5 12:00:20 GMT 2012 Rank 110 Aligned Residues 374 % Identity 11% Template d1bs0a_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.65

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		I	S	T	V	Q	Q	A	Y	Q	T	L	E	T	M	K	L	I	T	P	Q	.	.	.	.	P	R	S	G	Y	F	V	A	Q	R	K	A	Q	P	P	V	P	P	M	T	R	P	V	Q	R	P	V	E	I	T	Q	W	D	Q	V	L	D	M	L	E	A	H	S	D	S	S	I	V	P	L	S	K	S	T	P	D
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		Q	E	K	I	N	A	A	L	D	A	R	R	A	A	D	A	L	R	R	R	Y	P	V	A	Q	G	A	G	R	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	D	D	R	Q	Y	L	N	F	S	S	N	D	Y	.
Template Known Secondary structure														G	G	G									S	B		S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T							S				T	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																																		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	V
Query Conservation
Alig confidence																																																	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	.	.	.	L	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	M	A	K	E	D	R	I
Template Known Secondary structure		T	S	G	G	G																	S				S	B	T	T	T	T																	.	.	.		T		S						S																T	T
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	.	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D
Query Conservation																																																	.
Alig confidence																													.	.	.	.	.																.																		.	.	.
Template Conservation																													.	.	.	.	.																																		.	.	.
Template Sequence		A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	.	.	.	.	.	D	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N
Template Known Secondary structure					T	T											T	S	S	S							T	T	.	.	.	.	.											S			S	S								S	B		T	T	T			B			.	.	.											T	T
Template Predicted Secondary structure																													.	.	.	.	.																																		.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	.	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R
Template Known Secondary structure									T	T	T	T	T	T	S	S	G	G	G							T	T		.			S						S	S	S	T	T	S	S																								S	S	B
Template Predicted Secondary structure																													.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A
Query Conservation
Alig confidence																																		.	.	.										.																																			.
Template Conservation																																		.	.	.										.																																			.
Template Sequence		A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	.	.	.	P	F	T	L	A	D	S	C	S	.	A	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	.
Template Known Secondary structure									S																						T	T	S	.	.	.	S					S			S	.	S	B							S														T	T								T	T	S	.
Template Predicted Secondary structure																																		.	.	.										.																																			.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		S	G	K	Y	R	N	C	L	R	I	N	C	A	.	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Template Known Secondary structure		S		T	T							B			T	T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions