Job Description P39389 Confidence 99.94% Date Thu Jan 5 12:00:20 GMT 2012 Rank 112 Aligned Residues 327 % Identity 14% Template d1b9ha_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.00

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	.	C	K	P	G
Query Conservation																																																																													.
Alig confidence											.																																							.	.	.	.	.	.	.																					.
Template Conservation											.																																							.	.	.	.	.	.	.
Template Sequence		P	E	F	P	A	W	P	Q	Y	.	D	D	A	E	R	N	G	L	V	R	A	L	E	Q	G	Q	W	W	R	M	G	G	D	E	V	N	S	F	E	R	E	F	A	A	H	H	G	A	.	.	.	.	.	.	.	A	H	A	L	A	V	T	N	G	T	H	A	L	E	L	A	L	Q	V	M	G	V	G	P	G
Template Known Secondary structure							S	S			.														T	S			B	T	T	T		S													T	T		.	.	.	.	.	.	.	S						S													T	T			T	T
Template Predicted Secondary structure											.																																							.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	.	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q
Query Conservation																																				.
Alig confidence																																				.															.	.	.	.	.															.	.	.
Template Conservation																																																			.	.	.	.	.															.	.	.
Template Sequence		T	E	V	I	V	P	A	F	T	F	I	S	S	S	Q	A	A	Q	R	L	G	A	V	T	V	P	V	D	V	D	A	A	T	Y	N	L	D	P	E	A	V	A	A	A	V	T	P	R	T	.	.	.	.	.	K	V	I	M	P	V	H	M	A	G	L	M	A	D	.	.	.	M	D	A	L	A	K	I	S	A
Template Known Secondary structure								S	S	S		T									T	T								B		T	T	T			B											T	T		.	.	.	.	.						B		G	G	G					.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.															.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																																								.																			.	.	.	.	.	.	.
Query SS confidence																																																								.																			.	.	.	.	.	.	.
Query Sequence		R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	.	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	.	.	.	.	.	.	.
Query Conservation																																																								.																			.	.	.	.	.	.	.
Alig confidence																.	.	.	.																																					.																			.	.	.	.	.	.	.
Template Conservation																.	.	.	.
Template Sequence		D	T	G	V	P	L	L	Q	D	A	A	H	A	H	.	.	.	.	G	A	R	W	Q	G	K	R	V	G	E	L	D	S	I	A	T	F	S	F	Q	N	G	K	L	M	T	A	G	E	G	G	A	V	V	F	P	D	G	E	T	E	K	Y	E	T	A	F	L	R	H	S	C	G	R	P	R	D	D	R	R	Y
Template Known Secondary structure				T			B					T	T		T	.	.	.	.	T				T	T			G	G	G	S	S	S								T	T	S	S	S		S	S	S								T	T												T	B	T	T			T	T		S	S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
												344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.									400	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	.	.	.	.	.	.	.	.	F	L	L	W	I	E
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.																							.	.												.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.																							.	.
Template Sequence		F	H	K	I	A	G	S	N	M	R	L	N	E	F	S	A	S	V	L	R	A	Q	L	A	R	.	.	.	.	.	.	L	D	E	Q	I	A	V	R	D	E	R	W	T	L	L	S	R	L	L	G	A	I	.	.	D	G	V	V	P	Q	G	G	D	V	R	A	D	R	N	S	H	Y	M	A	M	F	R	I	P
Template Known Secondary structure					S				B		B		B												T	T	.	.	.	.	.	.																					T	S	.	.	T	T								T	T			B				S							T
Template Predicted Secondary structure																											.	.	.	.	.	.																							.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.							.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.																										.	.	440	.	.	.	.	.	.	.	.	.			450	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query Sequence		L	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	N	C	L	R	I	N	C	A	L	P	.	.	L	S	E	T	Y	R	E	A	L
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		G	L	T	E	E	R	R	N	A	L	V	D	R	L	V	E	A	G	L	P	A	F	A	A	F	R	A	I	Y	R	T	D	A	F	W	E	L	G	A	P	D	E	S	V	D	A	I	A	R	R	C	P	N	T	D	A	I	S	S	D	C	V	W	L	H	H	R	V	L	L	A	G	E	P	E	L	H	A	T	A
Template Known Secondary structure		T																T	T										G	G	G	S						S	S			S	S								T																G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		459	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	I	G	E	A	V	Y	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	I	A	D	A	V	A	R	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions