Job Description P39389 Confidence 99.90% Date Thu Jan 5 12:00:20 GMT 2012 Rank 147 Aligned Residues 329 % Identity 14% Template c3uwcA_ PDB info PDB header:transferase Chain: A: PDB Molecule:nucleotide-sugar aminotransferase; PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp Resolution 1.80 Å

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		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		S	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	.	C	K
Query Conservation																																																																															.
Alig confidence																										.	.	.	.	.																					.	.	.	.	.	.	.																						.
Template Conservation																										.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		S	Y	L	E	R	Q	F	A	D	I	E	P	Y	L	N	D	L	R	E	F	I	K	T	A	.	.	.	.	.	D	F	T	L	G	A	E	L	E	K	F	E	K	R	F	A	A	L	H	N	.	.	.	.	.	.	.	A	P	H	A	I	G	V	G	T	G	T	D	A	L	A	X	S	F	K	X	L	N	I	G
Template Known Secondary structure								T	S	S															T	.	.	.	.	.			S	S															T	T	.	.	.	.	.	.	.		S						S													T	T
Template Predicted Secondary structure																										.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.								50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A
Query Conservation
Alig confidence																																																.	.	.											.	.									.	.	.
Template Conservation																																																.	.	.											.	.									.	.	.
Template Sequence		A	G	D	E	V	I	T	C	A	N	T	F	I	A	S	V	G	A	I	V	Q	A	G	A	T	P	V	L	V	D	S	E	N	G	Y	V	I	D	P	E	K	I	E	A	A	I	.	.	.	T	D	K	T	K	A	I	X	P	V	.	.	H	Y	T	G	N	I	A	D	.	.	.	X	P	A	L	A	K	I	A
Template Known Secondary structure		T	T							S	S	S											T	T								B		T	T	S	S	B		G	G	G	T	G	G	G		.	.	.		T	T							B	.	.		G	G	G					.	.	.
Template Predicted Secondary structure																																																.	.	.											.	.									.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.																								.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	.	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.																								.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.																												.																								.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		K	K	H	N	L	H	I	V	E	D	A	C	Q	T	I	.	.	.	.	L	G	R	I	N	D	K	F	V	G	S	W	G	Q	F	A	C	F	S	L	H	P	L	K	N	L	N	V	W	S	D	A	G	V	I	I	T	H	S	D	E	Y	A	E	K	L	R	L	Y	R	N	H	G	L	I	N	R	D	V	C	V
Template Known Secondary structure				T	T								T	T		T	.	.	.	.	T				T	T			T	T	S	S	S	S							S	S	S	S	S	S			S	S								S												T	B	T	T				T	T			S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160					.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q
Query Conservation		.
Alig confidence		.																																																.	.	.
Template Conservation																																																		.	.	.
Template Sequence		E	Y	G	I	N	C	R	X	D	T	I	Q	A	V	I	A	N	R	L	X	N	Q	L	E	T	I	T	E	K	R	R	G	I	A	H	L	Y	D	Q	S	F	V	D	L	S	E	F	I	.	.	.	D	V	P	V	R	R	E	G	V	Y	H	V	F	H	I	Y	V	L	R	V	K	Y	R	D	Q	L	F	Q	Y
Template Known Secondary structure		S				B		B													G	G	G																			T	G	G	G	T	T	T		.	.	.							T	T						S	S						T	T
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.																				.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	N	C	L	R	I	N	C	A	.	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		L	K	D	N	G	I	E	V	K	I	H	Y	P	I	A	X	H	L	Q	P	A	A	K	S	L	G	Y	Q	Q	G	D	F	P	X	A	E	K	H	G	E	A	V	I	T	L	P	A	H	P	Y	L	T	E	E	E	I	N	Y	I	I	K	K	V	R	E	F	Y	L	E
Template Known Secondary structure					T	T	B			B		S		S	S		G	G	G	S	G	G	G	G	G	G				T	T	S																		T	T	S																		T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions