Phyre 2 alignment of P39389 with c3qi6B

Job Description P39389
Confidence 99.90% Date Thu Jan 5 12:00:20 GMT 2012

Rank 148 Aligned Residues 286

% Identity 16% Template c3qi6B_

PDB info PDB header:lyase Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs); PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99

Resolution 1.91 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V
Query Conservation
Alig confidence												.	.	.	.	.	.	.																																																		.
Template Conservation												.	.	.	.	.	.	.																																																		.
Template Sequence	A	L	E	A	A	L	A	A	V	E	D	.	.	.	.	.	.	.	A	A	F	G	R	A	F	S	S	G	M	A	A	A	D	C	A	L	R	A	M	L	R	P	G	D	H	V	V	I	P	D	D	A	Y	G	G	T	F	R	L	I	D	K	V	F	T	G	W	.	N	V	E	Y	T	P	V	A	L	A	D	L
Template Known Secondary structure										T	T	.	.	.	.	.	.	.		S						S	S															T	T							T	T												T	G	G	G	G	.	T								T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.																																																		.
Template SS confidence
	66	.	.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.

	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S
Query Conservation
Alig confidence																					.	.									.	.	.																																	.	.	.	.	.	.
Template Conservation																					.	.									.	.	.																																	.	.	.	.	.	.
Template Sequence	D	A	V	R	A	A	I	R	P	T	T	R	L	I	W	V	E	T	P	T	.	.	N	P	L	L	S	I	A	D	.	.	.	I	A	G	I	A	Q	L	G	A	D	S	S	A	K	V	L	V	D	N	T	F	A	S	P	A	L	Q	Q	P	L	S	L	.	.	.	.	.	.	G	A	D	V	V	L	H	S	T
Template Known Secondary structure									T	T								S	S		.	.	T	T	T						.	.	.											T	T								T	T	T		T	T	T			G	G	G	G	.	.	.	.	.	.	T		S
Template Predicted Secondary structure																					.	.									.	.	.																																	.	.	.	.	.	.
Template SS confidence
	138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.

	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	.	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P
Query Conservation																			.
Alig confidence																			.																																.	.	.	.	.	.																							.	.
Template Conservation																																																			.	.	.	.	.	.																							.	.
Template Sequence	T	Y	I	G	G	H	S	D	V	V	G	G	A	L	V	T	N	D	E	E	L	D	Q	S	F	A	F	L	Q	N	G	A	G	A	V	P	G	P	F	D	A	Y	L	T	M	R	G	L	K	T	.	.	.	.	.	.	L	V	L	R	M	Q	R	H	S	E	N	A	A	A	V	A	E	F	L	A	E	H	.	.
Template Known Secondary structure				S		S	S										S																																T	T	.	.	.	.	.	.																					T		.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.																							.	.
Template SS confidence
	207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.							.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

	389	390	.	.	.	.	.	.	.	.																		.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.												.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence	C	E	I	C	I	T	R	P	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	L	L	W	I	E	L	P	E	Q	.	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	.	.	.	.	.	.	.	.	.	.	.	R
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	P	A	I	S	T	V	L	Y	P	G	L	P	S	H	P	G	H	A	V	A	A	R	Q	M	R	G	F	G	G	M	V	S	V	R	M	R	A	G	R	T	A	A	E	Q	L	C	A	K	T	N	I	F	I	L	A	E	S	L	G	S	V	E	S	L	I	E	H	P	S	A	M	T	G	S	Q	L	E	V	P	D
Template Known Secondary structure	T	T							T	T	S	T	T	S	T	T									S	S			S							T	T													S	S	S				S					S	S						T	T	T					S					T
Template Predicted Secondary structure
Template SS confidence
	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	C	L	R	I	N	C	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence	D	L	V	R	L	S	V	G	I	E	D	V	A	D	L	.	.	.	L	D	D	L	K	Q	A	L
Template Known Secondary structure	T								S	S						.	.	.
Template Predicted Secondary structure																.	.	.
Template SS confidence
	365	.	.	.	.	370	.	.	.	.	.	.	.	.	.				380	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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