Phyre 2 alignment of P39389 with c3pj0D

Job Description P39389
Confidence 99.94% Date Thu Jan 5 12:00:20 GMT 2012

Rank 115 Aligned Residues 304

% Identity 8% Template c3pj0D_

PDB info PDB header:lyase Chain: D: PDB Molecule:lmo0305 protein; PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.																	.	.	.
Query SS confidence																																																	.	.																	.	.	.
Query Sequence	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	.	.	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	.	.	.	M	Q	M	L	R	G	M	G	V	K	V
Query Conservation																																																	.	.																	.	.	.
Alig confidence																					.	.	.	.	.	.	.																						.	.																	.	.	.
Template Conservation																					.	.	.	.	.	.	.
Template Sequence	Y	G	N	G	A	V	I	E	D	F	E	T	K	I	A	K	I	L	G	K	.	.	.	.	.	.	.	Q	S	A	V	F	F	P	S	G	T	X	A	Q	Q	I	A	L	R	I	W	A	D	R	K	E	N	R	R	V	A	Y	H	P	L	S	H	L	E	I	H	E	Q	D	G	L	K	E	L	Q	Q	I	T	P
Template Known Secondary structure	T	T	B	S															T		.	.	.	.	.	.	.	S						S																		T								T	T						S	S	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.
Template SS confidence
	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.								.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.

	217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I
Query Conservation
Alig confidence								.													.	.
Template Conservation								.													.	.
Template Sequence	L	L	L	G	T	A	N	.	Q	L	L	T	I	D	D	I	K	S	L	R	.	.	E	P	V	S	S	V	L	I	E	L	P	Q	R	E	I	G	G	Q	L	P	A	F	E	E	L	E	K	I	S	E	Y	C	H	E	Q	G	I	S	L	H	L	D	G	A	R	L	W	E	I	T	P	F	Y	Q	K	S	A	E
Template Known Secondary structure				S		T	T	.	S									T		S	.	.	S			S						S	S	B	G	G	G	T	S	B																		T								T	T		G	G	G					T
Template Predicted Secondary structure								.													.	.
Template SS confidence
	116	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	.	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N
Query Conservation																												.
Alig confidence												.	.	.	.													.																																				.	.	.	.
Template Conservation												.	.	.	.																																																	.	.	.	.
Template Sequence	E	I	C	A	L	F	D	S	V	Y	V	.	.	.	.	S	F	Y	G	I	G	G	I	A	G	A	I	L	A	G	N	D	D	F	V	Q	E	A	K	I	W	K	R	R	Y	G	G	D	L	I	S	L	Y	P	Y	I	L	S	A	D	Y	Y	F	.	.	.	.	E	K	R	I	G	K	X	A	E	Y	F	E	A
Template Known Secondary structure				T	T		S					.	.	.	.								S	S																					T	T				S														.	.	.	.				G	G	G
Template Predicted Secondary structure												.	.	.	.																																																	.	.	.	.
Template SS confidence
	193	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.

	376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.					.	.	450
Predicted Secondary structure																								.																																																		.	.	.	.
Query SS confidence																								.																																																		.	.	.	.
Query Sequence	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	.	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	.	.	.	.	L	P	L
Query Conservation																								.																																																		.	.	.	.
Alig confidence																								.																																							.	.										.	.	.	.
Template Conservation																																																															.	.
Template Sequence	A	K	G	L	A	E	R	F	N	S	C	S	G	V	K	T	V	P	E	V	P	V	S	N	X	F	H	V	Y	F	E	N	S	A	D	E	I	G	A	I	L	T	K	I	Q	D	E	T	G	V	G	I	S	G	Y	L	Q	E	K	S	A	D	.	.	V	C	A	F	E	V	S	V	G	D	A	F	A	E	I	P
Template Known Secondary structure										T	S	T	T					S	S	S		S	S	S							S	S																						S							T	T	.	.								B		G	G	G	G	G	S
Template Predicted Secondary structure																																																															.	.
Template SS confidence
	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.			.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

	451	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	K	N	L	E	L	V	F	R	C	L	E	K	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	344	.	.	.	.	.	350	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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