Phyre 2 alignment of P39389 with c3lv2A

Job Description P39389
Confidence 99.78% Date Thu Jan 5 12:00:20 GMT 2012

Rank 203 Aligned Residues 329

% Identity 10% Template c3lv2A_

PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin

Resolution 2.18 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.										190	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.
Query Sequence	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	.	.	.	.	.	.	.	.	.	K	P	G	D
Query Conservation																																																																				.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.
Template Sequence	A	L	D	Q	A	L	T	T	Q	L	R	V	M	N	H	V	M	F	G	G	L	T	H	E	P	A	A	R	L	A	K	L	L	V	D	I	T	P	.	.	.	.	.	A	G	L	D	T	V	F	F	S	D	S	G	S	V	S	V	E	V	A	A	K	M	A	L	Q	Y	W	R	G	R	G	L	P	G	K	R	R
Template Known Secondary structure														S				S	S	S																	S	S	.	.	.	.	.	T	T								S	S																		T	T	T		T	T
Template Predicted Secondary structure																																							.	.	.	.	.
Template SS confidence
	75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

	194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.																.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Query Sequence	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	.	.	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation
Template Sequence	L	M	T	W	R	G	G	Y	H	G	D	T	F	L	A	M	S	I	C	D	P	H	G	G	M	H	S	L	W	T	D	V	L	A	A	Q	V	F	A	P	Q	V	P	R	D	Y	D	P	A	Y	S	A	A	F	E	A	Q	L	A	Q	H	A	G	E	L	A	A	V	V	V	E	P	V	V	Q	G	A	G	G	M
Template Known Secondary structure					T	T					S	S					T	T	S		T	T	T	T	T	G	G	G	T		S	S	S											S	S																	G	G	G								S	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

	257	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence	I	M	.	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H
Query Conservation			.
Alig confidence			.																																																													.	.
Template Conservation																																																																.	.
Template Sequence	R	F	H	D	P	R	Y	L	H	D	L	R	D	I	C	R	R	Y	E	V	L	L	I	F	D	E	I	A	T	G	F	G	R	T	G	A	L	F	A	A	D	H	A	G	V	S	P	D	I	M	C	V	G	K	A	L	T	G	G	Y	L	S	L	.	.	A	A	T	L	C	T	A	D	V	A	H	T	I	S	A
Template Known Secondary structure					T													T	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	T	T				S						G	G	G	G	T	T	S	S			.	.
Template Predicted Secondary structure																																																																.	.
Template SS confidence
	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

	336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence	G	A	A	L	M	R	G	P	T	F	M	A	N	P	L	A	C	A	V	S	V	A	S	V	E	L	L	L	G	.	Q	D	W	R	T	R	I	T	E	L	A	A	G	L	T	A	G	L	D	T	A	R	A	L	P	A	V	T	D	V	R	V	C	G	A	I	G	V	I	E	C	D	R	P	V	D	L	A	V	A
Template Known Secondary structure	S					S			T	T	T	T																	T	.	S																		G	G	G	G	G	S	T	T								S	S							S	S
Template Predicted Secondary structure																														.
Template SS confidence
	308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

	416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	.	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R	A
Query Conservation																																	.
Alig confidence															.	.	.	.	.	.	.	.	.										.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence	T	P	A	A	L	D	R	G	V	W	L	R	P	F	.	.	.	.	.	.	.	.	.	R	N	L	V	Y	A	M	P	P	Y	I	C	T	P	A	E	I	T	Q	I	T	S	A	M	V	E	V	A	R	L	V
Template Known Secondary structure						T	T	T						B	.	.	.	.	.	.	.	.	.	T	T								T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
	389	390	.	.	.	.	.	.	.	.	.	400	.	.										.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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