Job Description P39389 Confidence 100.00% Date Thu Jan 5 12:00:20 GMT 2012 Rank 46 Aligned Residues 365 % Identity 16% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

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		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		R	P	V	E	I	T	Q	W	D	Q	V	L	D	M	L	E	A	H	S	D	S	S	I	V	P	L	S	K	S	.	.	.	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L
Query Conservation																															.	.	.
Alig confidence																															.	.	.																							.	.
Template Conservation																																																								.	.
Template Sequence		E	N	I	E	V	D	N	I	L	K	T	A	R	E	F	K	E	D	T	C	E	E	K	I	N	L	S	I	G	V	C	C	N	D	D	G	D	L	H	I	F	D	S	V	L	N	A	D	K	L	V	T	E	N	.	.	Y	K	E	K	P	Y	L	L	G	N	G	T	E	D	F	S	T	L	T	Q	N	L	I	F
Template Known Secondary structure																	T	T	S	S		S	S					S		S	S		B		T	T	S	S	B																	.	.								T	T	S	S
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		161	.		.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.
Predicted Secondary structure				.										.	.																						.																																			.	.
Query SS confidence				.										.	.																						.																																			.	.
Query Sequence		D	S	.	G	S	V	V	T	A	D	D	I	.	.	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	.	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	.	.	I	S	V	E	A	L	E	L
Query Conservation				.										.	.																						.																																			.	.
Alig confidence				.										.	.																						.																																			.	.
Template Conservation
Template Sequence		G	N	N	S	K	Y	I	E	D	K	K	I	C	T	I	Q	C	I	G	G	T	G	A	I	F	V	L	L	E	F	L	K	M	L	N	V	E	T	L	Y	V	T	N	P	P	Y	I	N	H	V	N	M	I	E	S	R	G	F	N	L	K	Y	I	N	F	F	D	Y	N	L	I	D	I	N	Y	D	L	F	L	N
Template Known Secondary structure			S	S		T	T	T	T	T	T																							T	T	T								S	S											T	T	T											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		235	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure						.																																																						.	.	.
Query SS confidence						.																																																						.	.	.
Query Sequence		A	L	E	Q	.	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	.	.	.	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S
Query Conservation						.																																																						.	.	.
Alig confidence						.																																																						.	.	.
Template Conservation
Template Sequence		D	L	R	N	I	P	N	G	S	S	V	I	L	Q	I	S	C	Y	N	P	C	S	V	N	I	E	E	K	Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I	I	F	D	I	A	Y	Q	G	F	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N	I	A	F	S	V	C	Q	S
Template Known Secondary structure						S		S	S								S	S		T	T	T																												S		T	T	T	S	S	S	S	T	T	G	G	G								T	T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		311	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.									.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.					.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure								.											.	.	.	.	.	.	.	.																																				.	.	.	.
Query SS confidence								.											.	.	.	.	.	.	.	.																																				.	.	.	.
Query Sequence		F	S	K	S	I	A	.	P	G	L	R	V	G	W	V	A	P	.	.	.	.	.	.	.	.	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	.	.	.	.	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A
Query Conservation								.											.	.	.	.	.	.	.	.																																				.	.	.	.
Alig confidence								.											.	.	.	.	.	.	.	.																																				.	.	.	.
Template Conservation
Template Sequence		F	S	K	N	M	S	L	Y	G	E	R	A	G	A	L	H	I	V	C	K	N	Q	E	E	K	K	I	V	F	N	N	L	C	F	I	V	R	K	F	Y	S	S	P	V	I	H	T	N	R	I	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S	Q	R	I	T	N	N	R	I
Template Known Secondary structure			T	T	T	S			T	T	T	T									S	S																	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.						390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		L	Y	T	C	W	I	R	E	Y	F	P	C	.	.	.	.	.	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	L	P	L	S	E
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.																				.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	F	N	K	L	E	T	Y	Q	K	K	Y	N	L	N	Y	D	W	N	V	Y	K	K	Q	R	G	L	F	S	F	V	P	L	L	A	.	.	.	.	.	K	I	A	E	H	L	K	T	H	H	I	Y	I	I	N	N	G	.	.	.	.	.	.	.	.	.	.	.	.	R	I	N	V	S	G	I	T	K	N
Template Known Secondary structure											G	G	G	G	T					G	G	G	G	S	S			S	S					G	G	G	G	.	.	.	.	.	G	G	T	T	T	T	T	T	T	T					T	T	S	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G			T	T
Template Predicted Secondary structure																																						.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.						.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.													380	.	.	.	.	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	D	Y	I	A	D	K	I	C	L	S	L	S	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions