Job Description P39389 Confidence 99.93% Date Thu Jan 5 12:00:20 GMT 2012 Rank 127 Aligned Residues 330 % Identity 12% Template c3ju7B_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution Resolution 2.19 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	.	C	K	P	G	D	I
Query Conservation																																																																											.
Alig confidence																												.	.	.	.																.	.	.	.	.																								.
Template Conservation																												.	.	.	.																.	.	.	.	.
Template Sequence		A	S	T	V	P	V	I	E	Y	L	D	E	L	K	E	I	D	A	S	H	I	Y	T	N	Y	G	.	.	.	.	P	I	N	Q	R	F	E	Q	T	I	X	S	G	F	F	.	.	.	.	.	Q	N	R	G	A	V	T	T	V	A	N	A	T	L	G	L	X	A	A	I	Q	L	K	K	R	K	K	G	K	Y
Template Known Secondary structure							G	G	G	T											T			S	S	S		.	.	.	.														T	S	.	.	.	.	.	T	T		S						S														S		T	T
Template Predicted Secondary structure																												.	.	.	.																.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	.	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H
Query Conservation																																			.
Alig confidence																																			.																							.	.									.	.	.										.
Template Conservation																																																										.	.									.	.	.										.
Template Sequence		A	L	X	P	S	F	T	F	P	A	T	P	L	A	A	I	W	C	G	L	E	P	Y	F	I	D	I	S	I	D	D	W	Y	X	D	K	T	V	L	W	D	K	I	E	E	L	K	E	E	V	A	I	V	V	P	Y	.	.	A	T	F	G	S	W	X	N	.	.	.	L	E	E	Y	E	E	L	E	K	.	K
Template Known Secondary structure						S	S	S		T									T	T								B		T	T	T		S	B													G	G	G							B	.	.		T	T	T	B				.	.	.										.
Template Predicted Secondary structure																																																										.	.									.	.	.										.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.		.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.											.	.	340	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	.	.	.	.	.	.	.	.	.	.	Y	A	I	S	S	F
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.
Template Sequence		G	V	P	V	V	V	D	A	A	P	G	F	G	.	.	.	L	X	N	G	G	X	H	Y	G	Q	D	F	S	G	X	I	I	Y	S	F	H	A	T	P	F	G	I	G	E	G	G	L	I	Y	S	K	N	E	E	D	I	Q	R	I	K	R	X	G	N	F	G	F	D	T	N	R	E	C	T	X	X	G	F	N
Template Known Secondary structure		T			B					T	T		T	T	.	.	.				T	T			T	T	T	T		S	S							B							B	S							S												T	B	T	T	B		T	T	S		B		S				B
Template Predicted Secondary structure															.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	K	X	S	E	Y	A	A	A	I	G	I	A	T	X	K	K	W	D	D	K	L	K	E	R	T	R	I	S	E	W	Y	K	Q	L	L	Q	S	N	G	L	X	K	K	G	W	Q	L	Q	K	T	E	A	V	I	Q	Q	F	X	P	I	L	C	P	E	E	V	R	N	K	Q	V	I	E	D	L	K	K	Q	K
Template Known Secondary structure																																								T	T	T	T	T	T	T		B					S		B			S	S							T	T	S												T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.																		.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		I	Q	V	A	A	G	S	I	F	S	A	S	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	N	C	L	R	I	N	C	A	.	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		I	E	A	R	L	Y	F	S	P	S	C	H	Q	Q	V	L	F	R	N	Y	K	S	T	D	L	T	R	T	N	K	I	A	K	R	I	V	S	L	P	L	W	E	G	X	T	K	E	I	V	E	Q	I	V	I	C	L	G	Q
Template Known Secondary structure		B			B		T	T	S	S		G	G	G	S	G	G	G	T	T	S		B	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions