Job Description P39389 Confidence 99.71% Date Thu Jan 5 12:00:20 GMT 2012 Rank 228 Aligned Residues 326 % Identity 13% Template c3i5tB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131 Resolution 2.00 Å

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		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.
Query Sequence		P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	.	.	.	.	.	.	.	.	C	K	P	G	D	I
Query Conservation																																																																				.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.
Template Sequence		E	I	V	D	A	M	A	H	Q	A	M	V	L	P	Y	A	S	P	W	Y	M	A	T	S	P	A	A	R	L	A	E	K	I	A	T	L	T	P	.	.	.	.	.	G	D	L	N	R	I	F	F	T	T	G	G	S	T	A	V	D	S	A	L	R	F	S	E	F	Y	N	N	V	L	G	R	P	Q	K	K	R
Template Known Secondary structure																			T	T	T															T	T	S	S	.	.	.	.	.	T	T								S	S																			T	T		T	T
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.						.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.														.	.	.	.	.	.	.	220	.	.	.	.	.	.	.												.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.												.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.												.	.	.
Query Sequence		V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	.	.	.	.	.	.	.	.	.	.	.	S	V	E	A	L	E	L	A	L	E	Q	.	.	.	W	P	I	K	G	I	I	L	V
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.												.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation
Template Sequence		I	I	V	R	Y	D	G	Y	H	G	S	T	A	L	T	A	A	C	T	G	R	T	G	N	W	P	N	F	D	I	A	Q	D	R	I	S	F	L	S	S	P	N	P	R	H	A	G	N	R	S	Q	E	A	F	L	D	D	L	V	Q	E	F	E	D	R	I	E	S	L	G	P	D	T	I	A	A	F	L	A	E
Template Known Secondary structure						T	T					S	S						T				G	G	G		T	T	S					T	T									G	G	G		T	T	S																						G	G	G
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	.	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P
Query Conservation																																																			.
Alig confidence																																																			.																							.	.
Template Conservation																																																																										.	.
Template Sequence		P	I	L	A	S	G	G	V	I	I	P	P	A	G	Y	H	A	R	F	K	A	I	C	E	K	H	D	I	L	Y	I	S	D	E	V	V	T	G	F	G	R	C	G	E	W	F	A	S	E	K	V	F	G	V	V	P	D	I	I	T	F	A	K	G	V	T	S	G	Y	V	P	L	.	.	G	G	L	A	I	S
Template Known Secondary structure		S	S	B	T	T	T	T	S	B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S						T	T					S						G	G	G	G	T	T	S	S			.	.
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340								.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.
Query Sequence		G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	.	.	.	.	.	.	.	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G
Query Conservation																.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																																									.	.	.	.
Template Sequence		E	A	V	L	A	R	I	S	G	E	N	A	K	G	S	W	F	T	N	G	Y	T	Y	S	N	Q	P	V	A	C	A	A	A	L	A	N	I	E	L	.	.	.	.	M	E	R	E	G	I	V	D	Q	A	R	E	M	A	D	Y	F	A	A	A	L	A	S	L	R	D	L	P	G	V	A	E	T	R	S	V	G
Template Known Secondary structure							T	T	S	G	G	G		T	T								T	T	T	T															.	.	.	.				T	T																		T	T	T	T	S	T	T								T
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.					.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.						.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																					.
Query SS confidence														.	.	.	.	.																																					.
Query Sequence		F	L	L	W	I	E	L	P	E	Q	V	D	.	.	.	.	.	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	.	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R	A
Query Conservation														.	.	.	.	.																																					.
Alig confidence														.	.	.	.	.																			.	.	.	.	.	.	.	.	.										.
Template Conservation																																					.	.	.	.	.	.	.	.	.
Template Sequence		L	V	G	C	V	Q	C	L	L	G	T	A	E	D	K	A	F	T	L	K	I	D	E	R	C	F	E	L	G	L	I	V	R	P	L	.	.	.	.	.	.	.	.	.	G	D	L	C	V	I	S	P	P	L	I	I	S	R	A	Q	I	D	E	M	V	A	I	M	R	Q	A	I	T	E	V
Template Known Secondary structure		T																											T	T							.	.	.	.	.	.	.	.	.	T	T								T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.										.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions