Job Description P39389 Confidence 99.53% Date Thu Jan 5 12:00:20 GMT 2012 Rank 255 Aligned Residues 276 % Identity 13% Template c3hvyC_ PDB info PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution Resolution 2.00 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	.	.	.	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	V	A	V
Query Conservation																																																								.	.	.
Alig confidence																										.																.	.	.	.	.	.	.								.	.	.
Template Conservation																										.																.	.	.	.	.	.	.
Template Sequence		L	K	A	F	Q	E	E	R	I	S	E	S	H	F	T	N	S	S	G	Y	G	Y	N	D	.	I	G	R	D	S	L	D	R	V	Y	A	N	I	F	N	.	.	.	.	.	.	.	T	E	S	A	F	V	R	P	H	F	V	N	G	T	H	A	I	G	A	A	L	F	G	N	L	R	P	N	D	T	X	X	S
Template Known Secondary structure								T	T			G	G	G	S					T	T		T	T		.															T	.	.	.	.	.	.	.		S						T	T		S	S												T			T	T
Template Predicted Secondary structure																										.																.	.	.	.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.								.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		198	.	200	.	.	.	.	.	.	.	.	.													210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		E	S	P	C	Y	Y	G	S	M	Q	M	L	.	.	.	.	.	.	.	.	.	.	.	.	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	.	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.															.																		.
Template Conservation																																								.
Template Sequence		I	C	G	X	P	Y	D	T	L	H	D	I	I	G	X	D	D	S	K	K	V	G	S	L	R	E	Y	G	V	K	Y	K	X	V	D	L	K	D	.	G	K	V	D	I	N	T	V	K	E	E	L	K	K	D	D	S	I	K	L	I	H	I	Q	R	S	T	G	Y	G	W	R	K	S	L	R	I	A	E	I	A
Template Known Secondary structure		S	S	S	S			G	G	G					T			T	T			S			T	G	G	G	T									B	T	.	T	B														T	T								S	S			S	S	S	S
Template Predicted Secondary structure																																								.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																																												.	.	.
Query SS confidence												.	.																																												.	.	.
Query Sequence		A	V	L	S	L	A	Q	R	H	D	.	.	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	.	.	.	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A
Query Conservation												.	.																																												.	.	.
Alig confidence												.	.																				.	.	.	.	.	.	.																		.	.	.
Template Conservation																																	.	.	.	.	.	.	.
Template Sequence		E	I	I	K	S	I	R	E	V	N	E	N	V	I	V	F	V	D	N	C	Y	G	E	F	V	E	E	K	E	P	T	.	.	.	.	.	.	.	D	V	G	A	D	I	I	A	G	S	L	I	K	N	I	G	G	G	I	A	T	T	G	G	Y	I	A	G	K	E	E	Y	V	T	Q	A	T	F	R	V	T	V
Template Known Secondary structure												S	S	S							T	T	T	T	T	T	S	S	S		G	G	.	.	.	.	.	.	.	G	G	T		S						T	T	S	G	G	G	T	T	T			S																			S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230								.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		340	.					.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400					.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure				.	.	.	.																																																												.	.	.	.
Query SS confidence				.	.	.	.																																																												.	.	.	.
Query Sequence		I	S	.	.	.	.	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	.	.	.	.	L	L	W	I	E	L	P	E	Q	V	D
Query Conservation				.	.	.	.																																																												.	.	.	.
Alig confidence				.	.	.	.																		.	.	.	.	.	.																							.	.	.												.	.	.	.
Template Conservation																									.	.	.	.	.	.																							.	.	.
Template Sequence		P	G	I	G	G	E	C	G	S	T	F	G	V	X	R	S	L	Y	E	G	L	F	X	.	.	.	.	.	.	A	P	H	V	T	I	E	A	V	K	G	A	V	F	C	A	R	I	X	E	L	A	.	.	.	G	F	D	V	L	P	K	Y	N	D	K	R	T	D	I	I	Q	A	I	K	F	N	D	E	K	K
Template Known Secondary structure		T	T	T	G	G	G					T	T												.	.	.	.	.	.																							.	.	.	T					S		T	T	S			S	S	S								S
Template Predicted Secondary structure																									.	.	.	.	.	.																							.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.							.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		412	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	C	V	A	R	Q	L	C	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	D	F	I	K	G	I	Q	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions