Phyre 2 alignment of P39389 with c3hqtB

Job Description P39389
Confidence 99.97% Date Thu Jan 5 12:00:20 GMT 2012

Rank 89 Aligned Residues 343

% Identity 13% Template c3hqtB_

PDB info PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa

Resolution 2.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	101	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure															.								.	.
Query SS confidence															.								.	.
Query Sequence	H	S	D	S	S	I	V	P	L	S	K	S	T	P	.	D	V	E	A	P	S	L	.	.	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C
Query Conservation															.								.	.
Alig confidence															.								.	.																																									.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.
Template Sequence	Q	A	S	P	D	D	I	I	L	Q	S	N	D	Y	L	A	L	A	N	H	P	L	I	K	A	R	L	A	K	S	L	L	E	E	Q	Q	S	L	F	M	S	A	S	F	L	Q	N	D	Y	D	K	P	M	I	E	K	R	L	A	K	F	T	G	F	.	.	.	.	.	.	.	D	E	C	L	L	S	Q	S	G
Template Known Secondary structure				T	T	S								T	T			T	T														S							S	B	G	G	G	G		S	T	T	T	S												T		.	.	.	.	.	.	.	S						S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Template SS confidence
	36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.

	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I
Query Conservation
Alig confidence																																														.	.	.	.	.																					.
Template Conservation																																														.	.	.	.	.																					.
Template Sequence	W	N	A	N	V	G	L	L	Q	T	I	C	Q	P	N	T	N	V	Y	I	D	F	F	A	H	M	S	L	W	E	G	A	R	Y	A	N	A	Q	A	H	P	F	M	H	N	.	.	.	.	.	N	C	D	H	L	R	M	L	I	Q	R	H	G	P	G	I	I	V	V	D	.	S	I	Y	S	T	L	G	T	I
Template Known Secondary structure														T	T							T	T	S											T	T								T	T	.	.	.	.	.														S							.	S	B		T	T	T			B
Template Predicted Secondary structure																																														.	.	.	.	.																					.
Template SS confidence
	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.

	258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	.	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M
Query Conservation																																												.
Alig confidence			.	.	.																																							.
Template Conservation			.	.	.
Template Sequence	A	P	.	.	.	L	A	E	L	V	N	I	S	K	E	F	G	C	A	L	L	V	D	E	S	H	S	L	G	T	H	G	P	N	G	A	G	L	L	A	E	L	G	L	T	R	E	V	H	F	M	T	A	S	L	A	K	T	F	A	Y	R	A	G	A	I	W	C	N	N	E	V	N	R	C	V	P	F	I	S
Template Known Secondary structure			.	.	.											T	T								T	T	T	B	T	T	B	S	G	G	G							T	T		G	G	G		S						S	S	S	T	T		S	S							S	S	S	G	G	G	T
Template Predicted Secondary structure			.	.	.
Template SS confidence
	183	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

	337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A
Query Conservation
Alig confidence																							.	.																														.	.	.	.	.
Template Conservation																							.	.																														.	.	.	.	.
Template Sequence	Y	P	A	I	F	S	S	T	L	L	P	Y	E	A	A	G	L	E	T	T	L	E	.	.	I	I	E	S	A	D	N	R	R	Q	H	L	D	R	M	A	R	K	L	R	I	G	L	S	Q	L	G	L	T	.	.	.	.	.	I	R	S	E	S	Q	I	I	G	L	E	T	G	D	E	R	N	T	E	K	V	R
Template Known Secondary structure						S	B																.	.					T																					T	T			.	.	.	.	.					S	S								S
Template Predicted Secondary structure																							.	.																														.	.	.	.	.
Template SS confidence
	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310						.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

	417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	.	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R
Query Conservation																																.
Alig confidence																		.														.
Template Conservation																		.
Template Sequence	D	Y	L	E	S	N	G	V	F	G	S	V	F	C	R	P	A	.	T	S	K	N	K	N	I	I	R	L	S	L	N	S	D	V	N	D	E	Q	I	A	K	I	I	E	V	C	S	D	A	V	N	Y
Template Known Secondary structure						T	T								T	T	S	.	S		T	T										T	T
Template Predicted Secondary structure																		.
Template SS confidence
	333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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