Job Description P39389 Confidence 99.69% Date Thu Jan 5 12:00:20 GMT 2012 Rank 232 Aligned Residues 344 % Identity 13% Template c3hmuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi Resolution 2.10 Å

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		106	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		I	V	P	L	S	K	S	.	.	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L
Query Conservation									.	.
Alig confidence									.	.																																																	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		I	L	D	A	M	A	G	L	W	C	V	N	I	G	Y	G	R	D	E	L	A	E	V	A	A	R	Q	M	R	E	L	P	Y	Y	N	T	F	F	K	T	T	H	V	P	A	I	A	L	A	Q	K	L	A	E	L	A	P	.	.	.	.	.	G	D	L	N	H	V	F	F	A	G	G	G	S	E	A	N	D	T
Template Known Secondary structure					T	T					T		T	T		B																	S				S	S	S	S																	S		.	.	.	.	.	T	T								S	S
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190									.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.													.	.	.	.	.	.	220	.													.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	M	A	V	C	K	.	.	.	.	.	.	.	.	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	.	.	.	.	.	.	.	.	.	.	.	.	V	K	V	I	E	I	P	T	.	.	.	.	.	.	.	.	.	.	.	.	D	P	E	T	G	I	S	V	E	A
Query Conservation									.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	R	M	V	R	T	Y	W	Q	N	K	G	Q	P	E	K	T	V	I	I	S	R	K	N	A	Y	H	G	S	T	V	A	S	S	A	L	G	G	M	A	G	M	H	A	Q	S	G	L	I	P	D	V	H	H	I	N	Q	P	N	W	W	A	E	G	G	D	M	D	P	E	E	F	G	L	A	R	A	R	E
Template Known Secondary structure													T	T		T	T								T	T					S	S							S								T	T				S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		232	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence		L	E	L	A	L	.	.	.	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C
Query Conservation							.	.	.
Alig confidence							.	.	.																																																																						.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		L	E	E	A	I	L	E	L	G	E	N	R	V	A	A	F	I	A	E	P	V	Q	G	A	G	G	V	I	V	A	P	D	S	Y	W	P	E	I	Q	R	I	C	D	K	Y	D	I	L	L	I	A	D	E	V	I	C	G	F	G	R	T	G	N	W	F	G	T	Q	T	M	G	I	R	P	H	I	M	.	.	.
Template Known Secondary structure											G	G	G								S	S	B	S	T	T	T		B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S							T				S			.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		309	310	.	.	.	.	.	.		.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure										.								.																	.	.
Query SS confidence										.								.																	.	.
Query Sequence		S	S	F	S	K	S	I	A	.	P	G	L	R	V	G	W	.	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	.	.	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R
Query Conservation										.								.																	.	.
Alig confidence		.								.								.																	.	.
Template Conservation		.
Template Sequence		.	T	I	A	K	G	L	S	S	G	Y	A	P	I	G	G	S	I	V	C	D	E	V	A	H	V	I	G	K	D	E	F	N	H	G	Y	T	Y	S	G	H	P	V	A	A	A	V	A	L	E	N	L	R	I	L	E	E	E	N	I	L	D	H	V	R	N	V	A	A	P	Y	L	K	E	K	W	E	A	L	T
Template Known Secondary structure		.				G	G	G	T	T	T	S	S																T	T	S							T	T	T	T																		T	T								T											G	G	G
Template Predicted Secondary structure		.
Template SS confidence
			287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.													.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																																										.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.																																										.
Query Sequence		E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	.	.	.	.	.	.	.	.	.	.	.	.	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	.	L	P	L	S
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																																										.
Alig confidence				.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.										.
Template Conservation				.	.	.																																																					.	.	.	.	.	.	.	.	.
Template Sequence		D	H	.	.	.	P	L	V	G	E	A	K	I	V	G	M	M	A	S	I	A	L	T	P	N	K	A	S	R	A	K	F	A	S	E	P	G	T	I	G	Y	I	C	R	E	R	C	F	A	N	N	L	I	M	R	H	V	.	.	.	.	.	.	.	.	.	G	D	R	M	I	I	S	P	P	L	V	I	T	P
Template Known Secondary structure		G	S	.	.	.	T	T								T	T								S		G	G	G	T			B	S	S		T	T													T	T	B						.	.	.	.	.	.	.	.	.	T	T								T	T
Template Predicted Secondary structure				.	.	.																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		366	.				.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.										420	.	.	.	.	.	.	.	.	.	430	.	.	.
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R	A	M	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	I	D	E	M	F	V	R	I	R	K	S	L	D	E	A	Q	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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