Phyre 2 alignment of P39389 with c3hdoB

Job Description P39389
Confidence 100.00% Date Thu Jan 5 12:00:20 GMT 2012

Rank 75 Aligned Residues 330

% Identity 18% Template c3hdoB_

PDB info PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens

Resolution 1.61 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	A	H	S	D	S	S	I	V	P	L	S	K	S	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H
Query Conservation
Alig confidence																		.	.																													.															.	.	.	.	.
Template Conservation																		.	.																													.															.	.	.	.	.
Template Sequence	Q	P	P	D	I	A	S	W	I	K	L	N	T	N	E	N	P	.	.	Y	P	P	S	P	E	V	V	K	A	I	L	E	E	L	G	P	D	G	A	A	L	R	I	Y	P	S	A	.	S	S	Q	K	L	R	E	V	A	G	E	L	Y	G	.	.	.	.	.	F	D	P	S	W	I	I	X	A	N	G	S	D
Template Known Secondary structure			S			T	T	S				S	S				S	.	.	S															T	T	T		G	G	G	G	S				S	.	S													T	.	.	.	.	.			G	G	G					S	S
Template Predicted Secondary structure																		.	.																													.															.	.	.	.	.
Template SS confidence
	19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.						.	.	80	.	.	.	.	.	.	.	.	.	90

	179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M
Query Conservation
Alig confidence																																																					.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence	E	V	L	N	N	L	I	R	A	F	A	A	E	G	E	E	I	G	Y	V	H	P	S	Y	S	Y	Y	G	T	L	A	E	V	Q	G	A	R	V	R	T	F	G	L	T	G	D	F	R	I	A	G	F	.	.	.	.	.	.	P	E	R	Y	E	G	K	V	F	F	L	T	T	P	N	A	P	L	G	P	S	F
Template Known Secondary structure													T	T							S	S	S		T										T								B		T	T	S		B	T	T		.	.	.	.	.	.		S	S	B			S						S	S		T	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
	91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	.	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K
Query Conservation																																																											.
Alig confidence		.	.	.																														.	.	.	.																						.																				.
Template Conservation		.	.	.																														.	.	.	.																																										.
Template Sequence	P	.	.	.	L	E	Y	I	D	E	L	A	R	R	C	A	G	X	L	V	L	D	E	T	Y	A	E	F	A	E	S	N	A	.	.	.	.	L	E	L	V	R	R	H	E	N	V	V	V	T	R	T	L	S	K	S	Y	S	L	A	G	X	R	I	G	L	A	I	A	R	P	E	V	I	A	A	L	D	.	K
Template Known Secondary structure		.	.	.											B	S	S							T	T	G	G	G	S	S				.	.	.	.	T							S	S							S	T	T	T	T	S		T	T	S																	.
Template Predicted Secondary structure		.	.	.																														.	.	.	.																																										.
Template SS confidence
	165				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.

	338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R
Query Conservation
Alig confidence																						.	.	.																										.	.	.						.													.
Template Conservation																						.	.	.																										.	.	.						.													.
Template Sequence	I	R	D	H	Y	N	L	D	R	L	A	Q	A	A	C	V	A	A	L	R	D	.	.	.	Q	A	Y	L	S	E	C	C	R	R	I	R	E	T	R	E	W	F	T	T	E	L	R	S	I	.	.	.	G	Y	D	V	I	.	P	S	Q	G	N	Y	L	F	A	T	P	P	.	D	R	D	G	K	R	V	Y	D
Template Known Secondary structure		S		S			S															.	.	.																									T	.	.	.	T					.			S	S	S							T	.	T
Template Predicted Secondary structure																						.	.	.																										.	.	.						.													.
Template SS confidence
	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.

	418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A
Query Conservation
Alig confidence																				.	.	.	.								.	.
Template Conservation																				.	.	.	.								.	.
Template Sequence	G	L	Y	A	R	K	V	L	V	R	H	F	S	D	P	L	L	A	H	.	.	.	.	G	X	R	I	S	I	G	.	.	T	R	E	E	X	E	Q	T	L	A	A	L	K	E	I
Template Known Secondary structure					T	T				B				S	T	T	T	T	T	.	.	.	.	S							.	.
Template Predicted Secondary structure																				.	.	.	.								.	.
Template SS confidence
	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.					.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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