Job Description P39389 Confidence 99.89% Date Thu Jan 5 12:00:20 GMT 2012 Rank 160 Aligned Residues 393 % Identity 11% Template c3hbxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana Resolution 2.67 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	Q	R	K	A	Q	P	P	V	P	P	M	T	R	P	V	Q	R	P	V	E	I	T	Q	W	D	Q	V	L	D	M	L	E	A	H	S	D	S	S	I	V	P	L	S	K	S	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L
Query Conservation
Alig confidence																																																																																.	.
Template Conservation																																																																																.	.
Template Sequence		V	H	S	T	F	A	S	R	Y	V	R	T	S	L	P	R	F	K	M	P	E	N	S	I	P	K	E	A	A	Y	Q	I	I	N	D	E	L	M	L	D	G	N	P	R	L	N	L	A	S	F	V	T	T	W	M	E	P	E	C	D	K	L	I	M	S	S	I	N	K	N	Y	V	D	M	D	E	Y	P	.	.
Template Known Secondary structure			S		T	T	T	S	S	G	G	G	S				S	S	S			S	S															G	G	G	S			G	G	G	B	T	T			S															T	T	T		B	T	T		T	T	T			.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.														.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.										.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.										.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	.	G	S	V	V	T	A	D	D	I	.	.	.	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	V	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M
Query Conservation																			.										.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																	.										.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	V	T	T	E	L	Q	N	R	C	V	N	M	I	A	H	L	F	N	A	P	L	E	E	A	E	T	A	V	G	V	G	T	V	G	S	S	E	A	I	M	L	A	G	L	A	F	K	R	K	W	Q	N	K	R	K	A	E	G	K	P	V	D	K	P	N	I	V	T	G	A	N	V	Q	V	C	W	E	K	F
Template Known Secondary structure		.																	T	T					T	T									S	S																							T	T				S								T	T
Template Predicted Secondary structure		.
Template SS confidence
			92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.							.	.	.	.	.	280	.
Predicted Secondary structure																			.																																																		.	.	.	.	.	.
Query SS confidence																			.																																																		.	.	.	.	.	.
Query Sequence		L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	.	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	.	.	.	.	.	.	I	V	I	F	E	D	D
Query Conservation																			.																																																		.	.	.	.	.	.
Alig confidence																			.																									.	.									.	.	.													.	.	.	.	.	.
Template Conservation																																												.	.									.	.	.
Template Sequence		A	R	Y	F	E	V	E	L	K	E	V	K	L	S	E	G	Y	Y	V	M	D	P	Q	Q	A	V	D	M	V	D	E	N	T	I	C	V	A	A	I	L	G	S	.	.	T	L	N	G	E	F	E	D	.	.	.	V	K	L	L	N	D	L	L	V	E	K	N	K	E	T	G	W	D	T	P	I	H	V	D	A
Template Known Secondary structure					T	T									B	T	T	B		S												T	T								B	S		.	.	T	T	T			B			.	.	.
Template Predicted Secondary structure																																												.	.									.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340											.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																					.																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.																									.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	.	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	.	.	.	.	.	.	.	.	.	.	S	S	F	N	V	P	S	T	Q	M
Query Conservation																																					.																									.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	G	G	F	I	A	P	F	L	Y	P	E	L	E	W	D	F	R	L	P	L	V	K	S	I	N	V	S	G	H	Y	G	L	V	Y	A	G	I	G	W	V	I	W	R	N	K	E	D	L	P	E	E	L	I	F	H	I	N	Y	L	G	A	D	Q	P	T	F	T	L	N	F	S	K	G	S	S	Q	V	I
Template Known Secondary structure		T	T	G	G	G	T						S	S				S	T	T	S	T	T															S	S							S	S	G	G	G	S		G	G	G						S	S	S	S							S			S		B	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.	400	.	.	.	.	.	.	.	.			.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure																																															.														.	.
Query SS confidence																																															.														.	.
Query Sequence		A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	.	P	K	G	G	F	L	L	W	I	E	L	P	E	.	.	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A
Query Conservation																																															.														.	.
Alig confidence										.																												.	.								.														.	.																			.
Template Conservation										.																												.	.																																										.
Template Sequence		A	Q	Y	Y	Q	L	I	R	.	L	G	H	E	G	Y	R	N	V	M	E	N	C	R	E	N	M	I	V	L	R	E	G	L	E	K	T	.	.	E	R	F	N	I	V	S	K	D	E	G	V	P	L	V	A	F	S	L	K	D	S	S	C	H	T	E	F	E	I	S	D	M	L	R	R	Y	G	W	I	V	.
Template Known Secondary structure										.																										T	T	.	.	T						S		S	S	S	S	S							S	S		S	S												T	T	T		B		.
Template Predicted Secondary structure										.																												.	.																																										.
Template SS confidence
		327	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	.	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R	A	M	E
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		P	A	Y	T	M	P	P	N	A	Q	H	I	T	V	L	R	V	V	I	R	E	D	F	S	R	T	L	A	E	R	L	V	I	D	I	E	K	V	M	R	E	L	D	E
Template Known Secondary structure								T	T		T	T										T	T																						T
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.