Job Description P39389 Confidence 100.00% Date Thu Jan 5 12:00:20 GMT 2012 Rank 18 Aligned Residues 374 % Identity 16% Template c3g0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Resolution 1.75 Å

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		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		R	P	V	E	I	T	Q	W	D	Q	V	L	D	M	L	E	A	H	S	D	S	S	I	V	P	L	S	K	S	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	.
Query Conservation																																																																																	.
Alig confidence																																		.	.																			.	.																										.
Template Conservation																																		.	.																			.	.
Template Sequence		G	X	A	S	I	R	D	L	V	A	L	V	T	N	L	E	K	A	T	G	T	K	F	C	R	X	E	X	G	V	P	G	.	.	L	P	A	P	Q	I	G	I	E	T	E	I	Q	K	L	R	E	G	.	.	V	A	S	I	Y	P	N	L	D	G	L	P	E	L	K	Q	E	A	S	R	F	A	K	L	F	V
Template Known Secondary structure		G	G																		T										S			.	.	S																	T	.	.	G	G	G	S				T	T
Template Predicted Secondary structure																																		.	.																			.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	.	.	.	.	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.
Template Conservation
Template Sequence		N	I	D	I	P	A	R	A	C	V	P	T	V	G	S	X	Q	G	C	F	V	S	F	L	V	A	N	R	T	H	K	N	R	E	Y	G	T	L	F	I	D	P	G	F	N	L	N	K	L	Q	C	R	I	L	G	Q	K	F	E	S	F	D	L	F	E	Y	R	G	E	K	L	R	E	K	L	E	S	Y	L	Q
Template Known Secondary structure							G	G	G					S														T	T	S		T	T		S								S													T								G	G	G	G		T	T											T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.							.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.
Query Sequence		W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	.	.	.	.	.	.	D	G	R	V	L	L	C	S	S	F	S
Query Conservation																																																																	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	Q	F	C	S	I	I	Y	S	N	P	N	N	P	T	W	Q	C	X	T	D	E	E	L	R	I	I	G	E	L	A	T	K	H	D	V	I	V	I	E	D	L	A	Y	F	G	X	D	F	R	K	D	Y	S	H	P	G	E	P	L	Y	Q	P	S	V	A	N	Y	T	D	N	Y	I	L	A	L	S	S	S
Template Known Secondary structure		T	T									S	S		T	T	T																			T	T								T	T	T	T			T	T	S				S	T	T	S	S						G	G	G	T		S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.																				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	.	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		A	F	S	Y	A	G	Q	R	I	G	V	L	X	I	S	G	K	L	Y	E	R	E	Y	P	D	L	E	E	S	F	G	R	L	R	F	G	E	A	L	S	S	S	A	L	Y	A	L	S	S	G	A	T	H	S	A	Q	W	G	X	A	A	X	L	K	A	C	N	D	G	E	Y	N	F	R	D	S	V	I	E	Y
Template Known Secondary structure				S		G	G	G															B		G	G	G					S		S	B							T	T							S	S	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.								.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.		.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.																										.
Query SS confidence																											.	.	.	.	.	.	.																										.
Query Sequence		Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	.	.	.	.	.	.	.	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	.	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I
Query Conservation																											.	.	.	.	.	.	.																										.
Alig confidence																.	.	.									.	.	.	.	.	.	.											.															.																.	.	.
Template Conservation																.	.	.																										.																															.	.	.
Template Sequence		G	R	K	A	R	I	X	K	K	X	F	L	D	N	.	.	.	G	F	N	I	V	Y	D	K	D	G	N	E	P	L	A	D	G	F	Y	F	T	V	G	Y	K	.	G	X	D	S	S	K	L	I	E	K	F	V	R	Y	G	X	C	A	I	T	L	K	T	T	G	S	K	R	N	E	.	.	.	A	X	R	I
Template Known Secondary structure														T	T	.	.	.	T				S	S				T	T					S	S	S							T	.	T													T	T						S	T	T	T	T				T	T	.	.	.
Template Predicted Secondary structure																.	.	.																										.																															.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.				.	410	.	.
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	C	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	T	S	L	L	P	E	S	Q	F	P	D	L	E	K	R	L	Q	X	L	N	A	E	G
Template Known Secondary structure				S	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions