 |
Job Description | P39389 | Confidence | 92.89% | Date | Thu Jan 5 12:00:20 GMT 2012 |
Rank | 389 | Aligned Residues | 61 |
% Identity | 18% | Template | c3cuoB_ |
PDB info |
PDB header:transcription regulator | Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav; |
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
|
Resolution | 2.00 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | Y | Q | H | L | A | T | L | L | A | E | R | I | E | Q | G | L | Y | R | H | G | E | K | L | P | S | V | R | S | L | S | Q | E | H | G | V | S | I | S | T | V | Q | Q | A | Y | Q | T | L | E | T | M | K | L | I | T | P | Q | P | R | S | G | Y | F | V |
Query Conservation |   |
  |
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |
|   |
|
|
|
|   |
|   |
|
|   |   |
|   |
|
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |
|   |
|   |   |   |   |
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |   |
|   |   |
|
|   | . |   |
|   |   |   |   |   |   | . |   |   |   |
|
|
|   |   |
|   |
|
|   |   |
|
|
|   |
|
|   |   |
|   |   |   |
|
|
|   |   |   |   | . |   |
|   |   |   |
Template Sequence |   |
L | L | K | A | M | S | H | P | K | R | L | L | I | L | C | . |
M | L | S | G | S | P | G | T | . |
S | A | G | E | L | T | R | I | T | G | L | S | A | S | A | T | S | Q | H | L | A | R | M | R | D | E | G | L | I | D | S | Q | R | . |
D | A | Q | R | I |
Template Known Secondary structure |   |
 |  |  |  | T |
| S |  |  |  |  |  |  |  |  | . |  |  | T | T |
| S |
|  | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  | . |
| S | S |
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |  |  | . |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . |  |
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | |
. | . | . | . | . | . | . | . | |
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | |
. | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|