Job Description P39389 Confidence 99.72% Date Thu Jan 5 12:00:20 GMT 2012 Rank 224 Aligned Residues 335 % Identity 14% Template c3bs8A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		S	D	S	S	I	V	P	L	S	K	S	T	P	D	V	E	A	.	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S
Query Conservation																			.
Alig confidence																			.																	.	.	.																									.	.	.	.	.	.
Template Conservation																																				.	.	.																									.	.	.	.	.	.
Template Sequence		D	G	N	E	Y	I	D	Y	V	L	S	W	G	P	L	I	L	G	H	T	N	D	R	V	V	E	S	L	K	K	V	A	E	Y	.	.	.	G	T	S	F	G	A	P	T	E	V	E	N	E	L	A	K	L	V	I	D	R	V	P	S	.	.	.	.	.	.	V	E	I	V	R	M	V	S	S	G	T	E	A
Template Known Secondary structure		T							S	S	G	G	G	T	T		T	T		B	S															.	.	.		S			S	S																S	T	T	.	.	.	.	.	.		S						S
Template Predicted Secondary structure																																				.	.	.																									.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.							.	110	.	.	.	.	.	.	.	.	.	120	.
		181	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	L	A	L	M	A	V	C	K	.	.	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q
Query Conservation												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		T	M	S	A	L	R	L	A	R	G	Y	T	G	R	N	K	I	L	K	F	E	G	C	Y	H	G	H	G	D	S	L	L	I	K	A	G	S	G	V	A	T	L	G	L	P	D	S	P	G	V	P	E	G	I	A	K	N	T	I	T	V	P	Y	N	.	.	.	.	.	D	L	E	S	V	K	L	A	F	Q	Q
Template Known Secondary structure														T									T					S		G	G	G						S	S	S	S		B				S	S	T	T			T	T	S	S	T	T						T	T	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.
				239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A
Query Conservation		.	.
Alig confidence		.	.																																																					.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		F	G	E	D	I	A	G	V	I	V	E	P	V	A	G	N	M	G	V	V	P	P	Q	E	G	F	L	Q	G	L	R	D	I	T	E	Q	Y	G	S	L	L	I	F	D	E	V	M	T	G	F	R	V	D	Y	.	.	.	.	.	N	C	A	Q	G	Y	F	G	V	T	P	D	L	T	C	L	G	K	V	I	G
Template Known Secondary structure			G	G	G								S	S	B		S	S	S		B				T	T													T								T	T	T	T	T	T	T	S	T	.	.	.	.	.	T						T	T				S						G	G	G	G
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250						.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.					.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	.	.	.	.	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.																								.																										.	.	.
Template Conservation																																																		.																										.	.	.
Template Sequence		G	G	L	P	V	G	A	Y	G	G	K	A	E	I	M	E	Q	I	A	P	S	G	P	I	Y	Q	A	G	T	L	S	G	N	P	L	A	M	T	A	G	L	E	T	L	K	Q	L	T	.	P	D	S	Y	K	N	F	I	K	K	G	D	R	L	E	E	G	I	S	K	A	A	E	A	H	.	.	.	G	I	P
Template Known Secondary structure		T	T	S	S												T	T	B	T	T	T	S	S	B					S	S	T	T														T			.																									T	.	.	.	T
Template Predicted Secondary structure																																																		.																										.	.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.				.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.														.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	L	P	L	S	E	T	Y	R	E	A	L	K
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.								.
Template Conservation																																																							.	.	.	.	.	.	.	.								.
Template Sequence		H	T	F	N	R	A	G	S	M	I	G	F	F	F	T	N	E	P	V	I	N	Y	E	T	A	K	A	S	D	L	K	L	F	A	S	Y	Y	K	G	M	A	N	E	G	V	F	L	P	P	S	Q	F	E	.	.	.	.	.	.	.	.	G	L	F	L	S	T	A	.	H	T	D	E	D	I	E	N	T	I	Q
Template Known Secondary structure								T	T						S	S	S	S				S					T	T	S															T	T					S	S	S	S	S	.	.	.	.	.	.	.	.		B				T	T	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.								.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400									.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.
		460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	G	E	A	V	Y	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	E	K	V	F	A	E	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions