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Job DescriptionP39389
Confidence100.00%DateThu Jan 5 12:00:20 GMT 2012
Rank10Aligned Residues420
% Identity17%Templatec2zy3A_
PDB info PDB header:lyaseChain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30....... ..40.........50.........60.........70.........80.......
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Query Sequence  TLLAERIEQGLYRHGEKLPSVRSLSQEHG. VSISTVQQAYQTLETMKLITPQPRSGYFVAQRKAQPPVPPMTRPVQRPVE
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Template Sequence  DGNRLMLNAGRGNPNFLATTPRRAFFRLGLFAAAESELSYSYMTTVGVGGLAKIDGIEG. . . . . . . . . . . . . . . . . . . . .
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S



TT

S

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STT.....................
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   27..30.........40.........50.........60.........70.........80.....
 
   88.90.........100.........110.........120.........130.........140.........150.........160.. .
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Query Sequence  ITQWDQVLDMLEAHSDSSIVPLSKSTPDVEAPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLMLDS. . . . G
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Template Sequence  . . . . . RFERYIAENRDQEGVRFLGKSLSYVRDQLGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADA
Template Known Secondary structure  .....TTTSTS


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SSTT

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   86...90.........100.........110.........120.........130.........140.........150.........160
 
   164.....170.........180........ .190.........200........ .210.........220...... ...230....
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Query Sequence  SVVTADDIIITSGCHNSMSLALMAV. . . . . CKPGDIVAVESPCYYGSMQM. . LRGMGVKVIEIPTDPETG. . ISVEALEL
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Template Sequence  IPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDK
Template Known Secondary structure  S
GGGSTTSS
TT
S

TSTTSTTT


BGGGTSB

GG
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   235....240.........250.........260.........270... ......280.........290.........300.........310..
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Query Sequence  ALEQWPIKGIILVPNCNNPLGFIMPDARKRAVLSLAQRH. . DIVIFEDDVYGELATEYPRPRTIHSWDIDGRVLLCSSFS
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Template Sequence  LK. DPAIKIFFC. VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFA. . . . ICPENTLLVYSFS
Template Known Secondary structure  GG.
TT.SS
SSS
B


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TTGGGSSS


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GGGST
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   241. .......250. ........260.........270.........280.........290.........300. ........310....
 
   313... ...320........ .330.........340.........350
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Query Sequence  KSIA. PGLRVGWVAPGR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YHDKLMHMKYAISSFNVPSTQM
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Template Sequence  KYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMA
Template Known Secondary structure  TTTT
GGG

SS
SS
TTTT
S
GGG

TTTTTTGGG
SS
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   315....320.........330.........340.........350.........360.........370.........380.........390....
 
   351........360.........370.........380.........390.........400........ .410....
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Query Sequence  AAATFVLEGHYHRHIRRMRQIYQRNLALYTCWIREYFPCEICITRPKGGFLLWIELPE. . . . . . . . . . . . . . . . QVDMVC
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Template Sequence  LFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLR. . . . DENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGD
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TT
TTTTTS



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   395....400.........410.........420.........430... ......440.........450.........460.........470
 
   415....420.. .......430.........440.........450.........460.......
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Query Sequence  VARQLCRM. KIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGEAVYR
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Template Sequence  MLFRIADETGIVLLPGRGFG. . . SNRPSGRASLANLNEYEYAAIGRALRKMADE
Template Known Secondary structure  S




SS
...TTS
SSSS
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   471........480.........490 .........500.........510.........520.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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