Job Description P39389 Confidence 99.62% Date Thu Jan 5 12:00:20 GMT 2012 Rank 247 Aligned Residues 280 % Identity 15% Template c2vycA_ PDB info PDB header:lyase Chain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli Resolution 2.4 Å

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		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.									.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.								.	.	.	.	.	.	.	.													.	.
Query SS confidence																																																			.	.								.	.	.	.	.	.	.	.													.	.
Query Sequence		I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	.	.	T	D	P	E	T	G	I	.	.	.	.	.	.	.	.	S	V	E	A	L	E	L	A	L	E	Q	W	.	.
Query Conservation																																																			.	.								.	.	.	.	.	.	.	.													.	.
Alig confidence																																																			.	.								.	.	.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	I	E	Q	G	L	M	L	T	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G	I	I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L
Template Known Secondary structure				S	S																T	T							S	S																							B		T	T	S		B					G	G	G	G	S												T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
									240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																.	.																													.							.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																.	.																													.							.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	.	.	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	.	Y	G	E	L	A	T	.	.	.	.	.	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R
Query Conservation		.	.	.	.	.	.	.																.	.																													.							.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.									.	.	.	.				.	.						.	.	.																					.							.	.	.	.	.
Template Conservation																	.	.	.	.											.	.	.
Template Sequence		T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	.	.	.	.	N	C	T	Y	D	G	V	C	Y	N	.	.	.	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N	P	I	Y	A	D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T
Template Known Secondary structure		T	G	G	G	T	T				S						.	.	.	.	S	S		T	T	S					.	.	.									T	T	T		S							T	T		T	T	G	G	G		G	G	G	T	T	S	S	S	S		S						S	S	B
Template Predicted Secondary structure																	.	.	.	.											.	.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.					320	.	.	.	.	.	.	.	.	.				330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.										.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.
Query Sequence		V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	.	.	.	.	.	.	.	.	.	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N
Query Conservation																										.	.	.	.	.	.	.	.	.
Alig confidence											.															.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		V	F	A	T	H	S	T	H	L	.	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I	C	A	S	N	D	V	A	V	S	M	M	D	G	N	S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F
Template Known Secondary structure											.		S			T	T										B	T														T	S		S	S																	S	T
Template Predicted Secondary structure											.
Template SS confidence
		378	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390				.	.	.	.	.	.	.																																																		.	.	400	.	.	.
Predicted Secondary structure																	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	.	.	.	I	C	I	T	R	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	F	L	L	W
Query Conservation																	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q	D	C	W	V	M	H	P	G	E	S	W	H	G	F	K	D	I	P	D	N	W	S	M	L	D	P	I	K	V	S
Template Known Secondary structure														T	T	T							S	S		S					T	T	T						G	G	G	S									G	G	G	T	B			T	T		T	T	T			T	T			T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
		404	.	.											.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.					.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																																														.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.																																														.	.	.	.
Query Sequence		I	E	L	.	.	.	.	.	.	.	.	.	.	P	E	Q	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	L	P	L	S	.	.	.	.	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R
Query Conservation					.	.	.	.	.	.	.	.	.	.																																														.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.
Template Sequence		I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	.	.	.	.	.	.	.	.	T	R	T	T	D	F	Q	I	M	F	L	F	S	M	G	V	T	R	G	K	W	G	T	L	V	N	T	L	C	S	F	K	R	H	Y	D	A
Template Known Secondary structure					S		B		T	T	S	S	B		S	S													T	T	T				.	.	.	.	.	.	.	.	S				S	S								T	T			T	T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570									.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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