Job Description P39389 Confidence 99.63% Date Thu Jan 5 12:00:20 GMT 2012 Rank 244 Aligned Residues 356 % Identity 12% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	V	L	D	M	L	E	A	H	S	D	S	S	I	V	P	L	S	K	S	T	P	D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	I	D	D	V	A	E	L	V	A	K	N	A	I	F	T	Q	H	P	D	C	I	A	H	L	H	T	P	P	L	X	P	A	V	A	A	E	A	X	I	A	A	L	N	Q	S	X	D	S	W	D	Q	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G
Template Known Secondary structure											T	G	G	G	S			T	T	S	T	T	B		S	S	S																						T	T		G	G	G																			T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190																					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Query Sequence		I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	R	G	M	G	V	.	.	.	K	V	I	E	I	P	T	D	P	E	T	G	I	S
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation
Template Sequence		I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K	K	S	H	F	T	V	Q	K	S	A	S	W	X	G	L	G	E	K	A	V	X	T	V	D	A	N	A	D	G	T	X	D
Template Known Secondary structure					S	S																														S		T	T	G	G	G							T	T	S		T									T	T	S		G	G	G						B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		V	E	A	L	E	L	A	L	E	Q	W	P	I	K	.	.	.	.	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.																		.	.	.
Template Conservation																																					.	.	.
Template Sequence		I	T	K	L	D	E	V	I	A	Q	A	K	A	E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	.	.	.	L	D	F	I	A	D	X	A	V	K	H	D	X	W	X	H	V	D	G	A	Y	G	G	A	L	I	L	S	S	H	K	S	R	L	K	G	V	E	R	A	H	S
Template Known Secondary structure															T	T										B	S		T	T	T			B			.	.	.												T								T	T	G	G	G	G	G	G	S	T	T	G	G	G	G	T	T	G	G	G		S
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.				.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R
Query Conservation
Alig confidence					.	.																				.	.	.	.	.																																							.	.	.	.
Template Conservation					.	.																				.	.	.	.	.																																							.	.	.	.
Template Sequence		I	S	V	.	.	D	F	H	K	L	F	Y	Q	T	I	S	C	G	A	L	L	V	N	D	.	.	.	.	.	K	S	N	F	K	F	L	L	K	R	F	D	A	L	K	V	F	X	T	X	Q	N	V	G	P	K	A	L	G	D	X	Y	D	H	L	L	A	Q	.	.	.	.	T	L	E	V	A	D	X	I	R
Template Known Secondary structure					.	.		T	T	S	T	T				S	S							S		.	.	.	.	.	G	G	G	G	G	G	G					T											T																.	.	.	.
Template Predicted Secondary structure					.	.																				.	.	.	.	.																																							.	.	.	.
Template SS confidence
		780	.	.			.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.						.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.					840	.	.	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.						.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.			450	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.																																						.	.
Query SS confidence																														.	.	.	.	.																																						.	.
Query Sequence		E	Y	F	P	C	E	I	C	I	T	R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	M	.	.	.	.	.	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	L	P	.	.	L	S	E	T	Y	R	E	A
Query Conservation																														.	.	.	.	.																																						.	.
Alig confidence				.	.																									.	.	.	.	.																					.	.	.	.														.	.
Template Conservation				.	.																																																		.	.	.	.
Template Sequence		T	N	.	.	D	Q	F	E	L	L	A	E	P	S	L	S	T	V	L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	A	L	R	L	E	A	L	T	R	G	I	A	V	L	G	E	T	I	V	.	.	.	.	D	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L
Template Known Secondary structure		T		.	.	T	T					S			S	S	S									S	S	S																	T	S		B							.	.	.	.	T	T											T	T
Template Predicted Secondary structure				.	.																																																		.	.	.	.
Template SS confidence
		873	.			.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.					.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Q	I	G	E	A	V	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	K	I	N	X	L	A	V	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		947	.	.	950	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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