Job Description P39389 Confidence 99.83% Date Thu Jan 5 12:00:20 GMT 2012 Rank 185 Aligned Residues 302 % Identity 15% Template c2nmpC_ PDB info PDB header:lyase Chain: C: PDB Molecule:cystathionine gamma-lyase; PDBTitle: crystal structure of human cystathionine gamma lyase Resolution 2.60 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.
Predicted Secondary structure																.	.																																																										.	.	.	.
Query SS confidence																.	.																																																										.	.	.	.
Query Sequence		H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	.	.	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	.	.	.	.	S	M	Q
Query Conservation																.	.																																																										.	.	.	.
Alig confidence																.	.														.	.	.	.	.	.	.															.																							.	.	.	.
Template Conservation																															.	.	.	.	.	.	.															.
Template Sequence		G	A	P	G	Q	G	F	E	Y	S	R	S	G	N	P	T	R	N	C	L	E	K	A	V	A	A	L	D	G	.	.	.	.	.	.	.	A	K	Y	C	L	A	F	A	S	G	L	A	A	T	.	V	T	I	T	H	L	L	K	A	G	D	Q	I	I	C	M	D	D	V	Y	G	G	T	N	R	Y	F	R	Q
Template Known Secondary structure		S	S	T	T					B	G	G	G																T	T	.	.	.	.	.	.	.		S						S	S						.					T	T	S		T	T							S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.															.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.								.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	.	I	V	I	F	E	D	D	V	Y	G	E	L
Query Conservation																																																																					.
Alig confidence																	.	.	.	.	.																							.	.									.	.	.													.
Template Conservation																	.	.	.	.	.																							.	.									.	.	.
Template Sequence		V	A	S	E	F	G	L	K	I	S	F	V	D	C	S	.	.	.	.	.	K	I	K	L	L	E	A	A	I	T	P	E	T	K	L	V	W	I	E	T	P	T	.	.	N	P	T	Q	K	V	I	D	.	.	.	I	E	G	C	A	H	I	V	H	K	H	G	D	I	I	L	V	V	D	N	T	F	M	S	P
Template Known Secondary structure		T	G	G	G	T	T									S	.	.	.	.	.	S										T	T								S	S		.	.	T	T	T						.	.	.									T	T	S	S	S								T	T	T
Template Predicted Secondary structure																	.	.	.	.	.																							.	.									.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	.	.	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H
Query Conservation																																									.	.
Alig confidence									.	.	.	.	.	.																											.	.																																		.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.																																																														.	.	.	.	.	.
Template Sequence		Y	F	Q	R	P	L	A	.	.	.	.	.	.	L	G	A	D	I	S	M	Y	S	A	T	K	Y	M	N	G	H	S	D	V	V	M	G	L	V	S	V	N	C	E	S	L	H	N	R	L	R	F	L	Q	N	S	L	G	A	V	P	S	P	I	D	C	Y	L	C	N	R	G	L	K	T	.	.	.	.	.	.
Template Known Secondary structure						T	T	T	.	.	.	.	.	.	T	T		S						T	T	T	T	T	T		S	S	S																																									T	T	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.																																																														.	.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.																		.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query Sequence		I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	L	L	W	I	E	L	P	E	Q	.	V	D	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Alig confidence																								.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																								.	.
Template Sequence		L	H	V	R	M	E	K	H	F	K	N	G	M	A	V	A	Q	F	L	E	S	N	.	.	P	W	V	E	K	V	I	Y	P	G	L	P	S	H	P	Q	H	E	L	V	K	R	Q	C	T	G	C	T	G	M	V	T	F	Y	I	K	G	T	L	Q	H	A	E	I	F	L	K	N	L	K	L	F	T	L	A	E
Template Known Secondary structure																						T		.	.	T	T							T	T	S	T	T	S	T	T									S	S			S							S	S													S	S	S				S
Template Predicted Secondary structure																								.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		427	.	.	430	.	.	.																				.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	G	S	I	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I	G	E	A	V	Y	R	A	M	E
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																																																	.	.	.
Template Sequence		S	L	G	G	F	E	S	L	A	E	L	P	A	I	M	T	H	A	S	V	L	K	N	D	R	D	V	L	G	I	S	D	T	L	I	R	L	S	V	G	L	E	D	E	E	D	L	.	.	.	L	E	D	L	D	Q	A	L	K	A	A	H	P
Template Known Secondary structure				S	S	S	S						G	G	G	T	T	T	T	T	S									T			T	T								S	S						.	.	.
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.				.	.	.	390	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions