Job Description P39389 Confidence 99.78% Date Thu Jan 5 12:00:20 GMT 2012 Rank 204 Aligned Residues 331 % Identity 13% Template c2e7uA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8 Resolution 1.90 Å

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		S	S	I	V	P	L	S	K	S	T	P	D	V	E	A	.	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S
Query Conservation																	.
Alig confidence																	.																		.	.	.																								.	.	.	.	.	.
Template Conservation																																			.	.	.																								.	.	.	.	.	.
Template Sequence		N	R	Y	L	D	Y	V	M	S	W	G	P	L	I	L	G	H	A	H	P	K	V	L	A	R	V	R	E	T	L	E	R	G	.	.	.	L	T	F	G	A	P	S	P	L	E	V	A	L	A	K	K	V	K	R	A	Y	P	F	.	.	.	.	.	.	V	D	L	V	R	F	V	N	S	G	T	E	A	T	M
Template Known Secondary structure							S	S	G	G	G	T	T		T	T		B	T														T		.	.	.	S			S	S																	T	T	.	.	.	.	.	.								S	S
Template Predicted Secondary structure																																			.	.	.																								.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.							.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		183	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure										.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	L	M	A	V	C	K	.	.	P	G	D	I	V	A	V	E	S	P	C	Y	Y	G	S	M	Q	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P
Query Conservation										.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence		S	A	L	R	L	A	R	G	Y	T	G	R	P	Y	I	V	K	F	R	G	N	Y	H	G	H	A	D	G	L	L	V	E	A	G	S	G	A	L	T	L	G	V	P	S	S	A	G	V	P	E	E	Y	A	K	L	T	L	V	L	E	Y	N	.	.	.	.	.	D	P	E	G	L	R	E	V	L	K	R	R	G
Template Known Secondary structure																				T	T							G	G	G	S					S	S	S			B				S	S	T	T							T	T						T	T	.	.	.	.	.													G
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190	.	.	.	.	.	.	.
		241		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		I	.	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A	Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L
Query Conservation			.
Alig confidence			.																																																		.	.	.	.	.
Template Conservation																																																					.	.	.	.	.
Template Sequence		E	E	I	A	A	I	I	F	E	P	V	V	G	N	A	G	V	L	V	P	T	E	D	F	L	K	A	L	H	E	A	K	A	Y	G	V	L	L	I	A	D	E	V	M	T	G	F	R	L	A	F	.	.	.	.	.	G	G	A	T	E	L	L	G	L	K	P	D	L	V	T	L	G	K	I	L	G	G	G	L
Template Known Secondary structure		G	G								S	S	B		T	T	S		B													G	G	G	G	T								T	T	T	T	T	T	S	S	T	.	.	.	.	.	T							T				S						G	G	G	G	T	T	S
Template Predicted Secondary structure																																																					.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure						.																		.	.	.																						.
Query SS confidence						.																		.	.	.																						.
Query Sequence		R	V	G	W	.	V	A	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	.	.	.	S	S	F	N	V	P	S	T	Q	M	A	A	A	T	F	V	L	E	G	H	Y	.	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T
Query Conservation						.																		.	.	.																						.
Alig confidence						.																		.	.	.																						.																										.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		P	A	A	A	Y	A	G	R	R	E	I	M	E	K	V	A	P	L	G	P	V	Y	Q	A	G	T	L	S	G	N	P	L	A	M	A	A	G	L	A	T	L	E	L	L	E	E	N	P	G	Y	Y	A	Y	L	E	D	L	G	A	R	L	E	A	G	L	K	E	V	L	K	E	K	.	.	.	G	L	P	H	T
Template Known Secondary structure		S												T	T	B	T	T	T	S	S	B					T	T		S																			T																								T	.	.	.	T
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.				.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.														.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	P	K	G	G	F	L	L	W	I	E	L	P	E	Q	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q	I
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.							.
Template Conservation																																																					.	.	.	.	.	.	.	.							.
Template Sequence		V	N	R	V	G	S	M	I	T	V	F	F	T	E	G	P	V	V	T	F	Q	D	A	R	R	T	D	T	E	L	F	K	R	F	F	H	G	L	L	D	R	G	I	Y	W	P	P	S	N	F	E	.	.	.	.	.	.	.	.	A	A	F	L	S	V	.	A	H	R	E	E	D	V	E	K	T	L	E	A	L
Template Known Secondary structure						T	T						S	S	S	S				S					T	T	S														T	T	T					S	S	S	S	S	.	.	.	.	.	.	.	.						T	.	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.							.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400									.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420
		462	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions