Return to main results Retrieve Phyre Job Id

Job DescriptionP39389
Confidence99.84%DateThu Jan 5 12:00:20 GMT 2012
Rank182Aligned Residues320
% Identity17%Templatec2cb1A_
PDB info PDB header:lyaseChain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase; PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
Resolution2.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   108.110.........120.........130.........140.........150.........160.........170.........180.......
Predicted Secondary structure 





















































Query SS confidence 















































































Query Sequence  PLSKSTPDVEAPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLMLDSGSVVTADDIIITSGCHNSMSLALMA
Query Conservation   
  
 
     
                     
    
   

   
              
 

 
   

      
Alig confidence 






































.












.......



















Template Conservation      

                         
 
   
 .   

   
 
 
.......        

  

  

 
Template Sequence  AVGLPIYAVAAYGFKTLEEGQERFATGEGYVYARQKDPT. AKALEERLKALEG. . . . . . . ALEAVVLASGQAATFAALLA
Template Known Secondary structure 
SS





SB


SS

S
SBTTT

.T.......
SSST
Template Predicted Secondary structure 




























.
.......



Template SS confidence 















































































   1920.........30.........40.........50....... ..60.........70 .........80.........90
 
   188.190.........200.........210. ........220.........230.........240.........250.........260...
Predicted Secondary structure 








....





























Query SS confidence 























. . . .



















































Query Sequence  VCKPGDIVAVESPCYYGSMQMLRG. . . . MGVKVIEIPTDPETGISVEALELALEQWPIKGIILVPNCNNPLGFIMPDARK
Query Conservation 
   

 


  
 
         .... 
     
      
 
   
           
   
   



   
    
Alig confidence 























....








......






















..







...
Template Conservation 
   

 

                    

 
    ...... 
 
 
   
   
 

      ..
 

 
 
...
Template Sequence  LLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVD. . . . . . PEPEAVREALSAKTRAVFVETVA. . NPALLVPD. . . L
Template Known Secondary structure  T

TT
TT

TTTTTT

......SS

TTSS
..TTT




...
Template Predicted Secondary structure 












......










..




...
Template SS confidence 















































































   91........100.........110.........120....... ..130.........140.........150 ........ .
 
   264.....270.........280.........290.........300.........310...... ...320........
Predicted Secondary structure 



























.




..............
Query SS confidence 




















































.











. . . . . . . . . . . . . .
Query Sequence  RAVLSLAQRHDIVIFEDDVYGELATEYPRPRTIHSWDIDGRVLLCSSFSKSIA. PGLRVGWVAPGR. . . . . . . . . . . . . .
Query Conservation    
   
      

 

 
                     

   
 

   . 
 
 
 
    ..............
Alig confidence 




























.......
















.











..............
Template Conservation    
  

   
  



 
   
      .......   


    
  
  
     

  
                 
Template Sequence  EALATLAEEAGVALVVDNTFGAAGALCRP. . . . . . . LAWGAHVVVESLTWASGHGSVLGGAVLSRETELWRNYPQFLQPW
Template Known Secondary structure  T

GGGTTTTS

G.......GGGT
S



S
SS






SGGGGSGGGG

Template Predicted Secondary structure 














.......




















Template SS confidence 















































































   160.........170.........180........ .190.........200.........210.........220.........230..
 
   329330.........340.........350.........360.........370.........380.........390.....
Predicted Secondary structure  ........















.....
Query SS confidence  . . . . . . . .


































































. . . . .
Query Sequence  . . . . . . . . YHDKLMHMKYAISSFNVPSTQMAAATFVLEGHYHRHIRRMRQIYQRNLALYTCWIREYFPCEICITR. . . . .
Query Conservation  ........                    
      
                      
   
            .....
Alig confidence  ........





























......






























.....
Template Conservation                      
       
      
  ......
  
       
  

  
     
  
  
 
   
Template Sequence  EALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET. . . . . . VALRVARMSETARFLAERLQGHPKVKALRYPGLPED
Template Known Secondary structure  GGGTTTT




GGG......T
TT
S
TTSTT
Template Predicted Secondary structure 










......











Template SS confidence 















































































   241........250.........260.........270........ .280.........290.........300.........310....
 
   396...400.........410.........420.........430....... ..440......
Predicted Secondary structure  ..........


















...................


Query SS confidence  . . . . . . . . . .









































. . . . . . . . . . . . . . . . . . .








Query Sequence  . . . . . . . . . . PKGGFLLWIELPEQVDMVCVARQLCRMKIQVAAGSIFSASGK. . . . . . . . . . . . . . . . . . . YRNCLRINC
Query Conservation  ..........
 

  
   
        
   
   

 
 

  
     ...................    



 
Alig confidence  ..........



























.












...................








Template Conservation 
            
 



              
    .  
 
   

   

               

    




Template Sequence  PAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLK. AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSV
Template Known Secondary structure  TT
SSS
S
SS
SS.
S

S
SS

TTTTTTTTS
TT

TT
Template Predicted Secondary structure 











.



























Template SS confidence 















































































   315....320.........330.........340.........350.. .......360.........370.........380.........390...
 
   447..450.........460
Predicted Secondary structure 



Query SS confidence 













Query Sequence  ALPLSETYREALKQ
Query Conservation       
 
  

  
Alig confidence 













Template Conservation 


  



 

  
Template Sequence  GLEDPLDLLALFEE
Template Known Secondary structure 
SS
Template Predicted Secondary structure 


Template SS confidence 













   394.....400.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions